PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mybl2b | dr11_v1_chr11_+_1551603_1551663 | 0.85 | 3.5e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_+_307665 Show fit | 3.85 |
ENSDART00000082083
|
zgc:113452 |
|
chr7_-_17337233 Show fit | 3.20 |
ENSDART00000050236
ENSDART00000102141 |
novel immune-type receptor 8 |
|
chr10_-_35257458 Show fit | 3.03 |
ENSDART00000143890
ENSDART00000139107 ENSDART00000082445 |
proline rich 11 |
|
chr3_-_60175470 Show fit | 2.91 |
ENSDART00000156597
|
si:ch73-364h19.1 |
|
chr6_-_55297274 Show fit | 2.74 |
ENSDART00000184283
|
ubiquitin-conjugating enzyme E2C |
|
chr3_-_9444749 Show fit | 2.68 |
ENSDART00000182191
|
|
|
chr19_-_47571456 Show fit | 2.47 |
ENSDART00000158071
ENSDART00000165841 |
ribonucleotide reductase M2 polypeptide |
|
chr17_+_1632294 Show fit | 2.37 |
ENSDART00000191959
|
signal recognition particle 14 |
|
chr11_-_40519886 Show fit | 2.23 |
ENSDART00000172819
|
migration and invasion inhibitory protein |
|
chr22_-_5655680 Show fit | 2.22 |
ENSDART00000159629
|
minichromosome maintenance complex component 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.8 | GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter(GO:0032968) |
0.1 | 4.1 | GO:0007050 | cell cycle arrest(GO:0007050) |
0.8 | 4.0 | GO:0030326 | embryonic limb morphogenesis(GO:0030326) |
0.5 | 3.6 | GO:1902975 | cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975) |
0.1 | 3.5 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
0.0 | 3.4 | GO:0009617 | response to bacterium(GO:0009617) |
0.1 | 3.1 | GO:0048538 | thymus development(GO:0048538) |
0.2 | 2.5 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.1 | 2.4 | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane(GO:0006614) |
0.3 | 2.3 | GO:1904825 | protein localization to microtubule(GO:0035372) protein localization to microtubule plus-end(GO:1904825) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.5 | GO:0005674 | transcription factor TFIIF complex(GO:0005674) |
0.2 | 2.5 | GO:0035101 | FACT complex(GO:0035101) |
0.3 | 2.4 | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting(GO:0005786) signal recognition particle(GO:0048500) |
0.1 | 2.3 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.2 | 2.2 | GO:0042555 | MCM complex(GO:0042555) |
0.0 | 2.1 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.2 | 2.0 | GO:0071005 | U2-type precatalytic spliceosome(GO:0071005) |
0.2 | 1.8 | GO:0000796 | condensin complex(GO:0000796) |
0.0 | 1.8 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
0.3 | 1.7 | GO:0031515 | tRNA (m1A) methyltransferase complex(GO:0031515) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.2 | GO:0031491 | nucleosome binding(GO:0031491) |
0.2 | 3.5 | GO:0016018 | cyclosporin A binding(GO:0016018) |
0.8 | 3.3 | GO:0001096 | TFIIF-class transcription factor binding(GO:0001096) |
0.0 | 2.9 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.1 | 2.8 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
0.4 | 2.5 | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.5 | 2.4 | GO:0030942 | endoplasmic reticulum signal peptide binding(GO:0030942) |
0.2 | 2.2 | GO:0017116 | single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) |
0.5 | 2.0 | GO:0004597 | peptide-aspartate beta-dioxygenase activity(GO:0004597) |
0.4 | 2.0 | GO:0030620 | U2 snRNA binding(GO:0030620) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 2.2 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 2.1 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.8 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.5 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.0 | 1.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.0 | 1.1 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.1 | PID CD40 PATHWAY | CD40/CD40L signaling |
0.0 | 1.1 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 1.1 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.3 | REACTOME VIRAL MESSENGER RNA SYNTHESIS | Genes involved in Viral Messenger RNA Synthesis |
0.0 | 3.3 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.1 | 2.7 | REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE | Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase |
0.2 | 2.5 | REACTOME ELONGATION ARREST AND RECOVERY | Genes involved in Elongation arrest and recovery |
0.1 | 2.5 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.2 | 2.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.1 | 2.0 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 1.4 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.1 | 1.3 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.1 | 1.3 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |