PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
myca | dr11_v1_chr24_+_10414028_10414028 | 0.86 | 2.8e-06 | Click! |
mych | dr11_v1_chr6_+_50451337_50451337 | -0.03 | 8.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_26531850 Show fit | 2.69 |
ENSDART00000183317
ENSDART00000131994 |
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like |
|
chr22_+_5118361 Show fit | 2.01 |
ENSDART00000168371
ENSDART00000170222 ENSDART00000158846 |
muscle-specific beta 1 integrin binding protein |
|
chr20_-_25626198 Show fit | 1.87 |
ENSDART00000126716
|
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase |
|
chr13_-_35892051 Show fit | 1.79 |
ENSDART00000145884
|
transforming, acidic coiled-coil containing protein 3 |
|
chr23_+_21459263 Show fit | 1.77 |
ENSDART00000104209
|
hairy-related 4, tandem duplicate 3 |
|
chr5_+_68807170 Show fit | 1.75 |
ENSDART00000017849
|
hairy and enhancer of split related-7 |
|
chr13_-_25199260 Show fit | 1.54 |
ENSDART00000057605
|
adenosine kinase a |
|
chr7_+_49715750 Show fit | 1.52 |
ENSDART00000019446
|
achaete-scute family bHLH transcription factor 1b |
|
chr17_-_19534474 Show fit | 1.49 |
ENSDART00000192469
|
cytochrome P450, family 26, subfamily C, polypeptide 1 |
|
chr14_-_12822 Show fit | 1.48 |
ENSDART00000180650
ENSDART00000188819 |
muscle segment homeobox 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 9.8 | GO:0006189 | 'de novo' IMP biosynthetic process(GO:0006189) |
0.0 | 4.0 | GO:0016072 | rRNA processing(GO:0006364) rRNA metabolic process(GO:0016072) |
0.2 | 3.5 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
0.0 | 3.0 | GO:0001755 | neural crest cell migration(GO:0001755) |
0.1 | 2.3 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.2 | 2.2 | GO:0006177 | GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037) |
0.1 | 2.1 | GO:0006383 | transcription from RNA polymerase III promoter(GO:0006383) |
0.3 | 2.0 | GO:0044209 | AMP salvage(GO:0044209) |
0.2 | 1.9 | GO:0000056 | ribosomal small subunit export from nucleus(GO:0000056) |
0.1 | 1.8 | GO:0001757 | somite specification(GO:0001757) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.0 | GO:0005730 | nucleolus(GO:0005730) |
0.2 | 2.5 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
0.0 | 2.4 | GO:0030496 | midbody(GO:0030496) |
0.2 | 2.1 | GO:0000176 | nuclear exosome (RNase complex)(GO:0000176) cytoplasmic exosome (RNase complex)(GO:0000177) |
0.1 | 2.1 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
0.1 | 1.6 | GO:0030686 | 90S preribosome(GO:0030686) |
0.5 | 1.5 | GO:0032301 | MutSalpha complex(GO:0032301) |
0.2 | 1.5 | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome(GO:0034388) |
0.1 | 1.5 | GO:0030131 | clathrin adaptor complex(GO:0030131) |
0.0 | 1.5 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 5.4 | GO:0004639 | phosphoribosylaminoimidazolesuccinocarboxamide synthase activity(GO:0004639) |
0.5 | 3.5 | GO:0004329 | formate-tetrahydrofolate ligase activity(GO:0004329) |
0.5 | 3.4 | GO:0050262 | ribosylnicotinamide kinase activity(GO:0050262) |
0.0 | 3.3 | GO:0016763 | transferase activity, transferring pentosyl groups(GO:0016763) |
0.0 | 3.1 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.1 | 2.7 | GO:0003899 | DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062) |
0.4 | 2.2 | GO:0003938 | IMP dehydrogenase activity(GO:0003938) |
0.1 | 2.1 | GO:0000175 | 3'-5'-exoribonuclease activity(GO:0000175) |
0.0 | 1.9 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.1 | 1.7 | GO:0061608 | nuclear import signal receptor activity(GO:0061608) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | PID AURORA A PATHWAY | Aurora A signaling |
0.0 | 1.8 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 1.2 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 1.2 | PID ATM PATHWAY | ATM pathway |
0.1 | 1.1 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.0 | 1.1 | PID ATR PATHWAY | ATR signaling pathway |
0.1 | 1.0 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.9 | ST T CELL SIGNAL TRANSDUCTION | T Cell Signal Transduction |
0.0 | 0.8 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.6 | PID SHP2 PATHWAY | SHP2 signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 11.0 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.3 | 3.0 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |
0.1 | 2.8 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
0.0 | 2.4 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 1.8 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.1 | 1.5 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.1 | 1.3 | REACTOME RNA POL I TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase I Transcription Termination |
0.1 | 1.3 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.0 | 1.3 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 1.3 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |