PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mycb | dr11_v1_chr2_+_32016256_32016256 | 0.91 | 5.1e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_8765428 Show fit | 2.49 |
ENSDART00000167793
|
MYB binding protein (P160) 1a |
|
chr14_-_12822 Show fit | 2.13 |
ENSDART00000180650
ENSDART00000188819 |
muscle segment homeobox 1a |
|
chr13_+_48359573 Show fit | 1.76 |
ENSDART00000161959
ENSDART00000165311 |
mutS homolog 6 (E. coli) |
|
chr9_-_11587070 Show fit | 1.71 |
ENSDART00000030995
|
uridine monophosphate synthetase |
|
chr1_-_19648227 Show fit | 1.71 |
ENSDART00000054574
|
polymerase (RNA) I polypeptide E |
|
chr13_-_25199260 Show fit | 1.57 |
ENSDART00000057605
|
adenosine kinase a |
|
chr10_+_16036573 Show fit | 1.57 |
ENSDART00000188757
|
lamin B1 |
|
chr12_-_4301234 Show fit | 1.55 |
ENSDART00000152377
ENSDART00000152521 |
carbonic anhydrase XVb |
|
chr22_+_5118361 Show fit | 1.54 |
ENSDART00000168371
ENSDART00000170222 ENSDART00000158846 |
muscle-specific beta 1 integrin binding protein |
|
chr19_-_24555623 Show fit | 1.53 |
ENSDART00000176022
|
polymerase (RNA) III (DNA directed) polypeptide G like a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 4.0 | GO:0071831 | chylomicron remnant clearance(GO:0034382) triglyceride-rich lipoprotein particle clearance(GO:0071830) intermediate-density lipoprotein particle clearance(GO:0071831) |
0.3 | 3.2 | GO:0006189 | 'de novo' IMP biosynthetic process(GO:0006189) |
0.1 | 2.9 | GO:0006383 | transcription from RNA polymerase III promoter(GO:0006383) |
0.0 | 2.5 | GO:0006364 | rRNA processing(GO:0006364) |
0.0 | 2.5 | GO:0001755 | neural crest cell migration(GO:0001755) |
0.2 | 2.1 | GO:0007080 | mitotic metaphase plate congression(GO:0007080) |
0.1 | 2.1 | GO:0043049 | otic placode formation(GO:0043049) |
0.1 | 1.9 | GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463) |
0.1 | 1.9 | GO:0030488 | tRNA methylation(GO:0030488) |
0.6 | 1.8 | GO:0002566 | somatic diversification of immune receptors via somatic mutation(GO:0002566) pyrimidine dimer repair(GO:0006290) somatic hypermutation of immunoglobulin genes(GO:0016446) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.5 | GO:0005730 | nucleolus(GO:0005730) |
1.0 | 4.0 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.2 | 2.9 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
0.0 | 2.6 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 2.3 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.7 | 2.1 | GO:0097125 | cyclin B1-CDK1 complex(GO:0097125) |
0.0 | 2.0 | GO:0030496 | midbody(GO:0030496) |
0.6 | 1.8 | GO:0032301 | MutSalpha complex(GO:0032301) |
0.1 | 1.7 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
0.1 | 1.4 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 4.0 | GO:0043395 | heparan sulfate proteoglycan binding(GO:0043395) |
0.0 | 2.2 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.3 | 2.0 | GO:0016426 | tRNA (adenine) methyltransferase activity(GO:0016426) |
0.1 | 1.9 | GO:0009982 | pseudouridine synthase activity(GO:0009982) |
0.6 | 1.8 | GO:0032143 | guanine/thymine mispair binding(GO:0032137) single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) oxidized DNA binding(GO:0032356) oxidized purine DNA binding(GO:0032357) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405) |
0.0 | 1.8 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.1 | 1.7 | GO:0003899 | DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062) |
0.1 | 1.7 | GO:0008175 | tRNA methyltransferase activity(GO:0008175) |
0.0 | 1.7 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
0.3 | 1.6 | GO:0004001 | adenosine kinase activity(GO:0004001) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.2 | 2.5 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 2.1 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.0 | 1.3 | PID AURORA A PATHWAY | Aurora A signaling |
0.1 | 1.2 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 1.2 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 0.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
0.0 | 0.7 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.5 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.0 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 2.8 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.1 | 2.7 | REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS | Genes involved in Apoptotic cleavage of cellular proteins |
0.2 | 2.1 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.0 | 2.0 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 1.9 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
0.1 | 1.7 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.1 | 1.5 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.1 | 1.3 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |
0.0 | 1.3 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |