PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mycn | dr11_v1_chr20_+_33294428_33294428 | 0.67 | 1.8e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_25626198 Show fit | 6.47 |
ENSDART00000126716
|
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase |
|
chr20_-_25626428 Show fit | 6.19 |
ENSDART00000136475
|
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase |
|
chr23_+_32101361 Show fit | 4.68 |
ENSDART00000138849
|
zgc:56699 |
|
chr20_-_26531850 Show fit | 3.94 |
ENSDART00000183317
ENSDART00000131994 |
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like |
|
chr20_-_25626693 Show fit | 3.50 |
ENSDART00000132247
|
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase |
|
chr16_-_42186093 Show fit | 3.47 |
ENSDART00000076030
|
fibrillarin |
|
chr9_-_11587070 Show fit | 3.45 |
ENSDART00000030995
|
uridine monophosphate synthetase |
|
chr5_+_68807170 Show fit | 3.41 |
ENSDART00000017849
|
hairy and enhancer of split related-7 |
|
chr9_-_12652984 Show fit | 3.39 |
ENSDART00000052256
|
small ubiquitin-like modifier 3b |
|
chr22_+_24220937 Show fit | 3.34 |
ENSDART00000165380
|
ubiquitin carboxyl-terminal hydrolase L5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.9 | 28.6 | GO:0006189 | 'de novo' IMP biosynthetic process(GO:0006189) |
0.1 | 9.9 | GO:0006364 | rRNA processing(GO:0006364) |
0.2 | 8.5 | GO:0030488 | tRNA methylation(GO:0030488) |
0.0 | 6.8 | GO:0000398 | RNA splicing, via transesterification reactions(GO:0000375) RNA splicing, via transesterification reactions with bulged adenosine as nucleophile(GO:0000377) mRNA splicing, via spliceosome(GO:0000398) |
0.2 | 6.5 | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462) |
0.2 | 6.2 | GO:0006383 | transcription from RNA polymerase III promoter(GO:0006383) |
0.3 | 6.1 | GO:0030150 | protein import into mitochondrial matrix(GO:0030150) |
2.0 | 6.0 | GO:0071831 | chylomicron remnant clearance(GO:0034382) triglyceride-rich lipoprotein particle clearance(GO:0071830) intermediate-density lipoprotein particle clearance(GO:0071831) |
0.3 | 5.9 | GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463) |
0.4 | 5.5 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 30.1 | GO:0005829 | cytosol(GO:0005829) |
0.1 | 25.9 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 8.4 | GO:0005739 | mitochondrion(GO:0005739) |
0.4 | 6.2 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
1.5 | 6.0 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.0 | 5.5 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 5.2 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.9 | 4.7 | GO:0031515 | tRNA (m1A) methyltransferase complex(GO:0031515) |
0.4 | 4.7 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
0.2 | 4.6 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.7 | 18.9 | GO:0004639 | phosphoribosylaminoimidazolesuccinocarboxamide synthase activity(GO:0004639) |
0.0 | 14.7 | GO:0003723 | RNA binding(GO:0003723) |
0.0 | 11.4 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.2 | 6.7 | GO:0034062 | DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062) |
0.3 | 6.5 | GO:0009982 | pseudouridine synthase activity(GO:0009982) |
0.9 | 6.3 | GO:0050262 | ribosylnicotinamide kinase activity(GO:0050262) |
2.0 | 6.0 | GO:0043395 | heparan sulfate proteoglycan binding(GO:0043395) |
0.1 | 6.0 | GO:0051540 | iron-sulfur cluster binding(GO:0051536) metal cluster binding(GO:0051540) |
0.8 | 5.5 | GO:0004329 | formate-tetrahydrofolate ligase activity(GO:0004329) |
0.1 | 4.9 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.4 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 3.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 3.1 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 2.5 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 2.0 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 2.0 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
0.1 | 1.3 | PID BARD1 PATHWAY | BARD1 signaling events |
0.0 | 1.2 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.1 | 1.1 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 1.1 | PID E2F PATHWAY | E2F transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.2 | 31.3 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.5 | 6.4 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.2 | 5.1 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.1 | 5.0 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.1 | 3.7 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
0.2 | 3.3 | REACTOME TGF BETA RECEPTOR SIGNALING ACTIVATES SMADS | Genes involved in TGF-beta receptor signaling activates SMADs |
0.0 | 3.3 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
0.2 | 3.0 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.1 | 3.0 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 2.8 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |