PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
myf6 | dr11_v1_chr4_+_21717793_21717793 | 0.05 | 8.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_+_30158652 Show fit | 3.00 |
ENSDART00000190682
|
nemo-like kinase, type 2 |
|
chr12_+_13256415 Show fit | 2.65 |
ENSDART00000144542
|
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like |
|
chr4_+_69619 Show fit | 2.49 |
ENSDART00000164425
|
MANSC domain containing 1 |
|
chr7_-_20756013 Show fit | 2.44 |
ENSDART00000185259
|
chromodomain helicase DNA binding protein 3 |
|
chr2_-_32624577 Show fit | 2.29 |
ENSDART00000112797
|
si:dkeyp-73d8.6 |
|
chr1_-_18446161 Show fit | 2.26 |
ENSDART00000089442
|
kelch-like family member 5 |
|
chr21_-_131236 Show fit | 2.16 |
ENSDART00000160005
|
si:ch1073-398f15.1 |
|
chr25_-_244263 Show fit | 2.14 |
ENSDART00000190224
|
|
|
chr14_-_46310549 Show fit | 1.95 |
ENSDART00000123832
|
crystallin, beta B1, like 1 |
|
chr18_+_15876385 Show fit | 1.91 |
ENSDART00000142527
|
early endosome antigen 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.2 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 4.6 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.1 | 4.3 | GO:0018107 | peptidyl-threonine phosphorylation(GO:0018107) |
0.0 | 3.7 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.1 | 3.3 | GO:0031532 | actin cytoskeleton reorganization(GO:0031532) |
0.0 | 3.2 | GO:0007264 | small GTPase mediated signal transduction(GO:0007264) |
0.0 | 3.0 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.0 | 2.8 | GO:0001764 | neuron migration(GO:0001764) |
0.0 | 2.8 | GO:0006936 | muscle contraction(GO:0006936) |
0.1 | 2.7 | GO:0032456 | endocytic recycling(GO:0032456) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.8 | GO:0005884 | actin filament(GO:0005884) |
0.2 | 3.5 | GO:0031430 | M band(GO:0031430) |
0.1 | 3.1 | GO:0098978 | glutamatergic synapse(GO:0098978) |
0.1 | 2.8 | GO:0055038 | recycling endosome membrane(GO:0055038) |
0.4 | 2.7 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
0.4 | 2.6 | GO:0043194 | axon initial segment(GO:0043194) |
0.2 | 2.4 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.1 | 2.1 | GO:0032591 | dendritic spine membrane(GO:0032591) |
0.0 | 2.0 | GO:0044309 | dendritic spine(GO:0043197) neuron spine(GO:0044309) |
0.0 | 2.0 | GO:0030425 | dendrite(GO:0030425) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 15.2 | GO:0003779 | actin binding(GO:0003779) |
0.0 | 7.6 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.1 | 5.7 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 4.6 | GO:0004707 | MAP kinase activity(GO:0004707) |
0.0 | 4.1 | GO:0050839 | cell adhesion molecule binding(GO:0050839) |
0.2 | 3.5 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
0.0 | 3.3 | GO:0003678 | DNA helicase activity(GO:0003678) |
0.0 | 2.7 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.3 | 2.5 | GO:0003828 | alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity(GO:0003828) |
0.1 | 2.5 | GO:0031267 | small GTPase binding(GO:0031267) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.4 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.1 | 2.4 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.1 | 2.0 | ST PHOSPHOINOSITIDE 3 KINASE PATHWAY | PI3K Pathway |
0.1 | 1.7 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.1 | 1.6 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 1.1 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 1.0 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.1 | 0.9 | PID REELIN PATHWAY | Reelin signaling pathway |
0.1 | 0.9 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 0.9 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.9 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 2.6 | REACTOME CLASS A1 RHODOPSIN LIKE RECEPTORS | Genes involved in Class A/1 (Rhodopsin-like receptors) |
0.3 | 2.3 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.2 | 1.9 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.0 | 1.6 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.0 | 1.5 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 1.5 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 1.1 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |
0.1 | 1.1 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.0 | 1.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |