PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
myod1 | dr11_v1_chr25_-_31423493_31423493 | 0.69 | 1.1e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_49715750 Show fit | 1.72 |
ENSDART00000019446
|
achaete-scute family bHLH transcription factor 1b |
|
chr16_-_29146624 Show fit | 1.67 |
ENSDART00000159814
ENSDART00000009826 |
myocyte enhancer factor 2d |
|
chr8_-_50287949 Show fit | 1.64 |
ENSDART00000023639
|
NK2 transcription factor related 7 |
|
chr19_+_15441022 Show fit | 1.55 |
ENSDART00000098970
ENSDART00000140276 |
lin-28 homolog A (C. elegans) |
|
chr19_+_15440841 Show fit | 1.55 |
ENSDART00000182329
|
lin-28 homolog A (C. elegans) |
|
chr7_-_18881358 Show fit | 1.52 |
ENSDART00000021502
|
MLLT3, super elongation complex subunit |
|
chr10_+_31244619 Show fit | 1.51 |
ENSDART00000145562
ENSDART00000184412 |
roundabout, axon guidance receptor, homolog 4 (Drosophila) |
|
chr3_+_14641962 Show fit | 1.47 |
ENSDART00000091070
|
zgc:158403 |
|
chr13_-_50624743 Show fit | 1.46 |
ENSDART00000167949
|
ventral homeobox |
|
chr7_+_2455344 Show fit | 1.40 |
ENSDART00000172942
|
si:dkey-125e8.4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.4 | GO:0030241 | skeletal muscle myosin thick filament assembly(GO:0030241) |
0.2 | 2.5 | GO:0035914 | skeletal muscle cell differentiation(GO:0035914) |
0.2 | 2.3 | GO:0042661 | regulation of mesodermal cell fate specification(GO:0042661) |
0.0 | 2.3 | GO:0060048 | cardiac muscle contraction(GO:0060048) |
0.0 | 2.2 | GO:0050768 | negative regulation of neurogenesis(GO:0050768) |
0.7 | 2.1 | GO:0098528 | skeletal muscle fiber differentiation(GO:0098528) |
0.2 | 2.0 | GO:2000290 | smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021910) regulation of myotome development(GO:2000290) |
0.1 | 2.0 | GO:2000826 | regulation of heart morphogenesis(GO:2000826) |
0.0 | 2.0 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
0.1 | 1.9 | GO:0045746 | negative regulation of Notch signaling pathway(GO:0045746) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.9 | GO:0031672 | A band(GO:0031672) |
0.0 | 2.6 | GO:0005795 | Golgi stack(GO:0005795) |
0.0 | 1.8 | GO:0005657 | replication fork(GO:0005657) |
0.0 | 1.7 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.0 | 1.3 | GO:0005604 | basement membrane(GO:0005604) |
0.4 | 1.2 | GO:0034456 | CURI complex(GO:0032545) UTP-C complex(GO:0034456) |
0.1 | 1.2 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.0 | 1.2 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.2 | GO:0000786 | nucleosome(GO:0000786) |
0.0 | 1.1 | GO:0005762 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.8 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.0 | 3.2 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.1 | 2.1 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
0.1 | 2.0 | GO:0008449 | N-acetylglucosamine-6-sulfatase activity(GO:0008449) |
0.4 | 1.8 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
0.1 | 1.8 | GO:0051879 | Hsp90 protein binding(GO:0051879) |
0.0 | 1.8 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.1 | 1.7 | GO:0005112 | Notch binding(GO:0005112) |
0.0 | 1.6 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.1 | 1.3 | GO:0030172 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.0 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 2.0 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 1.7 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 1.4 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 1.4 | PID ATM PATHWAY | ATM pathway |
0.0 | 1.3 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 1.2 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 1.0 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 1.0 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 1.0 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.0 | 1.7 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.1 | 1.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 1.2 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.0 | 1.1 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.0 | 1.0 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.0 | 1.0 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.0 | 1.0 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.0 | 0.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.0 | 0.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |