PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
myog | dr11_v1_chr11_-_22599584_22599584 | 0.71 | 6.5e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_-_46201008 Show fit | 5.11 |
ENSDART00000160110
|
transglutaminase 1 like 4 |
|
chr21_-_217589 Show fit | 2.31 |
ENSDART00000185017
|
|
|
chr17_-_14815557 Show fit | 2.13 |
ENSDART00000154473
|
nidogen 2a (osteonidogen) |
|
chr7_+_2455344 Show fit | 1.86 |
ENSDART00000172942
|
si:dkey-125e8.4 |
|
chr20_+_43691208 Show fit | 1.78 |
ENSDART00000152976
ENSDART00000045185 |
lin-9 DREAM MuvB core complex component |
|
chr19_-_47571456 Show fit | 1.73 |
ENSDART00000158071
ENSDART00000165841 |
ribonucleotide reductase M2 polypeptide |
|
chr20_-_29498178 Show fit | 1.66 |
ENSDART00000152986
ENSDART00000027851 ENSDART00000152954 |
ribonucleotide reductase M2 polypeptide |
|
chr7_+_44715224 Show fit | 1.65 |
ENSDART00000184630
|
si:dkey-56m19.5 |
|
chr7_+_49715750 Show fit | 1.61 |
ENSDART00000019446
|
achaete-scute family bHLH transcription factor 1b |
|
chr21_-_19919020 Show fit | 1.60 |
ENSDART00000147396
|
protein phosphatase 1, regulatory subunit 3B |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.1 | GO:0018149 | peptide cross-linking(GO:0018149) |
0.4 | 4.4 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.1 | 3.4 | GO:0061386 | closure of optic fissure(GO:0061386) |
0.5 | 2.4 | GO:0030326 | embryonic limb morphogenesis(GO:0030326) |
0.7 | 2.2 | GO:0098528 | skeletal muscle fiber differentiation(GO:0098528) |
0.7 | 2.2 | GO:0051574 | positive regulation of histone H3-K9 methylation(GO:0051574) |
0.2 | 2.1 | GO:0000002 | mitochondrial genome maintenance(GO:0000002) |
0.1 | 2.0 | GO:0046501 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
0.0 | 1.8 | GO:0006487 | protein N-linked glycosylation(GO:0006487) |
0.0 | 1.7 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.1 | GO:0031672 | A band(GO:0031672) |
0.0 | 3.2 | GO:0005604 | basement membrane(GO:0005604) |
0.1 | 2.4 | GO:0005657 | replication fork(GO:0005657) |
0.0 | 2.2 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.0 | 2.1 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.0 | 1.8 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.2 | 1.7 | GO:0000796 | condensin complex(GO:0000796) |
0.1 | 1.6 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.0 | 1.6 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.1 | 1.3 | GO:0045095 | keratin filament(GO:0045095) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.1 | GO:0003810 | protein-glutamine gamma-glutamyltransferase activity(GO:0003810) |
0.6 | 4.4 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.0 | 3.1 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
0.0 | 2.3 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.4 | 2.1 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
0.0 | 2.0 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
0.1 | 1.9 | GO:0051879 | Hsp90 protein binding(GO:0051879) |
0.2 | 1.8 | GO:0005049 | nuclear export signal receptor activity(GO:0005049) |
0.1 | 1.6 | GO:2001069 | glycogen binding(GO:2001069) |
0.0 | 1.6 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.2 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 3.7 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.1 | 3.0 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 2.0 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.8 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 1.5 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 1.2 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.1 | 1.1 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 1.1 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 0.7 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.4 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.2 | 2.2 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.0 | 1.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 1.7 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 1.4 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.1 | 1.3 | REACTOME RNA POL I TRANSCRIPTION INITIATION | Genes involved in RNA Polymerase I Transcription Initiation |
0.0 | 1.3 | REACTOME P75 NTR RECEPTOR MEDIATED SIGNALLING | Genes involved in p75 NTR receptor-mediated signalling |
0.1 | 1.1 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.0 | 1.1 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.0 | 1.1 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |