PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
neurod1 | dr11_v1_chr9_-_44295071_44295071 | 0.59 | 8.1e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr13_-_51065048 Show fit | 14.72 |
ENSDART00000168085
|
|
|
chr25_+_37130450 Show fit | 7.56 |
ENSDART00000183358
|
si:ch1073-174d20.1 |
|
chr3_-_50443607 Show fit | 7.03 |
ENSDART00000074036
|
recoverin a |
|
chr8_+_21376290 Show fit | 6.52 |
ENSDART00000136765
|
elastase 2 |
|
chr12_+_46967789 Show fit | 6.48 |
ENSDART00000114866
|
ornithine aminotransferase |
|
chr6_-_13783604 Show fit | 6.40 |
ENSDART00000149536
ENSDART00000041269 ENSDART00000150102 |
crystallin, beta A2a |
|
chr5_-_26118855 Show fit | 6.21 |
ENSDART00000009028
|
elastase 3 like |
|
chr23_+_2778813 Show fit | 5.67 |
ENSDART00000142621
|
DNA topoisomerase I |
|
chr2_+_31475772 Show fit | 5.67 |
ENSDART00000130722
|
calcium channel, voltage-dependent, beta 2b |
|
chr18_+_46773198 Show fit | 5.48 |
ENSDART00000174647
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 9.9 | GO:1901385 | regulation of voltage-gated calcium channel activity(GO:1901385) |
0.1 | 7.3 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 7.3 | GO:0007186 | G-protein coupled receptor signaling pathway(GO:0007186) |
0.6 | 7.0 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.1 | 6.6 | GO:0061512 | protein localization to cilium(GO:0061512) |
0.7 | 6.5 | GO:0006561 | proline biosynthetic process(GO:0006561) L-proline biosynthetic process(GO:0055129) |
0.2 | 6.5 | GO:0016525 | negative regulation of angiogenesis(GO:0016525) |
0.1 | 6.5 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.2 | 5.9 | GO:0060319 | primitive erythrocyte differentiation(GO:0060319) |
0.1 | 5.8 | GO:1990573 | potassium ion import across plasma membrane(GO:1990573) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 19.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.2 | 14.9 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.2 | 8.9 | GO:0043204 | perikaryon(GO:0043204) |
0.1 | 6.7 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.2 | 6.2 | GO:0043195 | terminal bouton(GO:0043195) |
0.0 | 6.1 | GO:0097458 | neuron part(GO:0097458) |
0.6 | 5.7 | GO:0042583 | chromaffin granule(GO:0042583) |
0.0 | 4.4 | GO:0045121 | membrane raft(GO:0045121) membrane microdomain(GO:0098857) |
0.1 | 4.1 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 4.0 | GO:0005802 | trans-Golgi network(GO:0005802) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.3 | GO:0051015 | actin filament binding(GO:0051015) |
0.0 | 16.2 | GO:0004672 | protein kinase activity(GO:0004672) |
0.1 | 12.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.4 | 11.3 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.1 | 9.8 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.2 | 9.6 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.0 | 6.6 | GO:0004930 | G-protein coupled receptor activity(GO:0004930) |
0.1 | 6.5 | GO:0030170 | pyridoxal phosphate binding(GO:0030170) |
0.1 | 6.5 | GO:0019905 | syntaxin binding(GO:0019905) |
0.2 | 6.0 | GO:0070006 | metalloaminopeptidase activity(GO:0070006) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.0 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 6.3 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
1.0 | 5.1 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
0.1 | 5.0 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.1 | 4.1 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.2 | 3.6 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.1 | 3.6 | PID MET PATHWAY | Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) |
0.1 | 3.1 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 3.1 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 2.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 6.5 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.1 | 5.7 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.1 | 5.4 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.7 | 5.1 | REACTOME REGULATION OF IFNG SIGNALING | Genes involved in Regulation of IFNG signaling |
0.2 | 5.0 | REACTOME RECYCLING PATHWAY OF L1 | Genes involved in Recycling pathway of L1 |
0.1 | 4.5 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.1 | 4.3 | REACTOME CLASS A1 RHODOPSIN LIKE RECEPTORS | Genes involved in Class A/1 (Rhodopsin-like receptors) |
0.3 | 3.8 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.3 | 3.4 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.1 | 3.4 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |