PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfat5b | dr11_v1_chr7_+_67325933_67325933 | 0.54 | 1.8e-02 | Click! |
nfat5a | dr11_v1_chr25_-_37121335_37121335 | 0.25 | 3.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_+_612594 Show fit | 1.11 |
ENSDART00000150903
|
kynureninase |
|
chr23_-_27875140 Show fit | 1.01 |
ENSDART00000143662
|
ankyrin repeat domain 33Aa |
|
chr21_+_6291027 Show fit | 0.88 |
ENSDART00000180467
ENSDART00000184952 ENSDART00000184006 |
formin binding protein 1b |
|
chr8_+_1843135 Show fit | 0.87 |
ENSDART00000141452
|
synaptosomal-associated protein 29 |
|
chr2_-_37960688 Show fit | 0.86 |
ENSDART00000055565
|
cerebellin 14 |
|
chr16_+_45746549 Show fit | 0.85 |
ENSDART00000190403
|
progestin and adipoQ receptor family member VI |
|
chr20_-_53624645 Show fit | 0.83 |
ENSDART00000083427
ENSDART00000152920 |
solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29 |
|
chr2_-_26499842 Show fit | 0.82 |
ENSDART00000186929
|
|
|
chr2_-_5502256 Show fit | 0.82 |
ENSDART00000193037
|
S-antigen; retina and pineal gland (arrestin) a |
|
chr10_+_22782522 Show fit | 0.80 |
ENSDART00000079498
ENSDART00000145558 |
si:ch211-237l4.6 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.2 | GO:0097052 | L-kynurenine metabolic process(GO:0097052) L-kynurenine catabolic process(GO:0097053) |
0.2 | 0.9 | GO:0006844 | acyl carnitine transport(GO:0006844) |
0.1 | 0.9 | GO:0048730 | epidermis morphogenesis(GO:0048730) |
0.1 | 0.8 | GO:1901678 | heme transport(GO:0015886) iron coordination entity transport(GO:1901678) |
0.1 | 0.8 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.0 | 0.8 | GO:0006471 | protein ADP-ribosylation(GO:0006471) |
0.0 | 0.8 | GO:0071482 | cellular response to light stimulus(GO:0071482) |
0.0 | 0.7 | GO:0006942 | regulation of striated muscle contraction(GO:0006942) |
0.0 | 0.7 | GO:0031532 | actin cytoskeleton reorganization(GO:0031532) |
0.1 | 0.6 | GO:0000050 | urea cycle(GO:0000050) urea metabolic process(GO:0019627) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | GO:0031201 | SNARE complex(GO:0031201) |
0.0 | 0.8 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.0 | 0.7 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 0.6 | GO:0033165 | interphotoreceptor matrix(GO:0033165) |
0.0 | 0.5 | GO:0044545 | NSL complex(GO:0044545) |
0.0 | 0.5 | GO:0000407 | pre-autophagosomal structure(GO:0000407) |
0.0 | 0.4 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.0 | 0.4 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 0.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.0 | 0.3 | GO:0035371 | microtubule plus-end(GO:0035371) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.2 | GO:0016822 | hydrolase activity, acting on acid carbon-carbon bonds(GO:0016822) hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances(GO:0016823) |
0.0 | 1.2 | GO:0005484 | SNAP receptor activity(GO:0005484) |
0.2 | 0.9 | GO:0015227 | acyl carnitine transmembrane transporter activity(GO:0015227) |
0.0 | 0.8 | GO:0003950 | NAD+ ADP-ribosyltransferase activity(GO:0003950) |
0.1 | 0.7 | GO:0031013 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.1 | 0.6 | GO:0016813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813) |
0.0 | 0.6 | GO:0030898 | actin-dependent ATPase activity(GO:0030898) |
0.1 | 0.5 | GO:0035035 | histone acetyltransferase binding(GO:0035035) |
0.1 | 0.5 | GO:0047238 | glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity(GO:0047238) |
0.0 | 0.5 | GO:0032266 | phosphatidylinositol-3-phosphate binding(GO:0032266) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.3 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.0 | 0.3 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.0 | 0.2 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.1 | 0.8 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.1 | 0.8 | REACTOME HYALURONAN METABOLISM | Genes involved in Hyaluronan metabolism |
0.0 | 0.3 | REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS | Genes involved in Apoptotic cleavage of cellular proteins |
0.0 | 0.2 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.0 | 0.2 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |