PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfatc2a | dr11_v1_chr23_+_39089574_39089574 | 0.58 | 9.9e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_+_19616799 Show fit | 1.58 |
ENSDART00000143077
|
F-box protein 10 |
|
chr13_+_32740509 Show fit | 1.34 |
ENSDART00000076423
ENSDART00000160138 |
sine oculis binding protein homolog (Drosophila) a |
|
chr13_-_298454 Show fit | 1.34 |
ENSDART00000135782
|
chitin synthase 1 |
|
chr6_-_48094342 Show fit | 1.29 |
ENSDART00000137458
|
solute carrier family 2 (facilitated glucose transporter), member 1b |
|
chr22_-_3914162 Show fit | 1.26 |
ENSDART00000187174
ENSDART00000190612 ENSDART00000187928 ENSDART00000057224 ENSDART00000184758 |
major histocompatibility complex class I UMA |
|
chr8_+_22931427 Show fit | 1.26 |
ENSDART00000063096
|
synaptophysin a |
|
chr17_+_33340675 Show fit | 1.18 |
ENSDART00000184396
ENSDART00000077553 |
xanthine dehydrogenase |
|
chr20_+_46040666 Show fit | 1.17 |
ENSDART00000060744
|
si:dkey-7c18.24 |
|
chr17_-_45370200 Show fit | 1.17 |
ENSDART00000186208
|
zinc finger protein 106a |
|
chr14_+_40874608 Show fit | 1.14 |
ENSDART00000168448
|
si:ch211-106m9.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.7 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.1 | 4.1 | GO:0006805 | xenobiotic metabolic process(GO:0006805) |
0.0 | 3.6 | GO:0071805 | cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805) |
0.0 | 2.8 | GO:1990778 | protein localization to plasma membrane(GO:0072659) protein localization to cell periphery(GO:1990778) |
0.0 | 1.9 | GO:0030050 | vesicle transport along actin filament(GO:0030050) actin filament-based transport(GO:0099515) |
0.1 | 1.8 | GO:1902285 | semaphorin-plexin signaling pathway involved in neuron projection guidance(GO:1902285) semaphorin-plexin signaling pathway involved in axon guidance(GO:1902287) |
0.4 | 1.6 | GO:0003322 | pancreatic A cell development(GO:0003322) |
0.0 | 1.6 | GO:0048843 | negative regulation of axon extension involved in axon guidance(GO:0048843) negative regulation of axon guidance(GO:1902668) |
0.1 | 1.5 | GO:0060079 | excitatory postsynaptic potential(GO:0060079) |
0.0 | 1.5 | GO:1990138 | neuron projection extension(GO:1990138) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.8 | GO:0031012 | extracellular matrix(GO:0031012) |
0.0 | 3.5 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.0 | 3.1 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 3.0 | GO:0016459 | myosin complex(GO:0016459) |
0.2 | 2.4 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.1 | 2.4 | GO:0002116 | semaphorin receptor complex(GO:0002116) |
0.3 | 2.3 | GO:0033165 | interphotoreceptor matrix(GO:0033165) |
0.2 | 2.3 | GO:0044224 | juxtaparanode region of axon(GO:0044224) |
0.0 | 2.2 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.0 | 2.1 | GO:0099572 | postsynaptic specialization(GO:0099572) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.0 | 3.3 | GO:0008017 | microtubule binding(GO:0008017) |
0.0 | 3.0 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 2.6 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.2 | 2.5 | GO:0030507 | spectrin binding(GO:0030507) |
0.1 | 2.4 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
0.1 | 2.4 | GO:0017154 | semaphorin receptor activity(GO:0017154) |
0.0 | 2.1 | GO:0008201 | heparin binding(GO:0008201) |
0.1 | 2.0 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.0 | 1.9 | GO:0005251 | delayed rectifier potassium channel activity(GO:0005251) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 1.9 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.7 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 1.0 | PID WNT NONCANONICAL PATHWAY | Noncanonical Wnt signaling pathway |
0.0 | 1.0 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.0 | 0.8 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.0 | 0.8 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 0.8 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 0.7 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 0.7 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 1.5 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.0 | 1.3 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.2 | 1.2 | REACTOME PURINE CATABOLISM | Genes involved in Purine catabolism |
0.1 | 1.0 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.0 | 1.0 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 0.9 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.1 | 0.9 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.1 | 0.9 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.0 | 0.9 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |