PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfe2l1b | dr11_v1_chr12_+_28854963_28854963 | 0.75 | 2.5e-04 | Click! |
nfe2l2b | dr11_v1_chr6_-_10902916_10902916 | -0.18 | 4.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_306036 Show fit | 2.18 |
ENSDART00000103659
|
mesogenin 1 |
|
chr8_-_554540 Show fit | 1.84 |
ENSDART00000163934
|
Danio rerio uncharacterized LOC100329294 (LOC100329294), mRNA. |
|
chr5_-_69316142 Show fit | 1.57 |
ENSDART00000157238
ENSDART00000144570 |
smoothelin b |
|
chr14_-_970853 Show fit | 1.28 |
ENSDART00000130801
|
acyl-CoA synthetase long chain family member 1b |
|
chr16_+_26777473 Show fit | 1.25 |
ENSDART00000188870
|
cadherin 17, LI cadherin (liver-intestine) |
|
chr10_-_1961576 Show fit | 1.20 |
ENSDART00000042441
|
teratocarcinoma-derived growth factor 1 |
|
chr3_+_22442445 Show fit | 1.18 |
ENSDART00000190921
|
WNK lysine deficient protein kinase 4b |
|
chr7_+_2455344 Show fit | 1.13 |
ENSDART00000172942
|
si:dkey-125e8.4 |
|
chr13_-_33207367 Show fit | 1.05 |
ENSDART00000146138
ENSDART00000109667 ENSDART00000182741 |
thyroid hormone receptor interactor 11 |
|
chr1_-_33645967 Show fit | 1.02 |
ENSDART00000192758
|
claudin g |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 2.2 | GO:0048340 | paraxial mesoderm morphogenesis(GO:0048340) paraxial mesoderm formation(GO:0048341) |
0.1 | 2.1 | GO:0019835 | cytolysis(GO:0019835) |
0.1 | 1.3 | GO:0035338 | long-chain fatty-acyl-CoA biosynthetic process(GO:0035338) |
0.4 | 1.2 | GO:0090008 | convergent extension involved in nephron morphogenesis(GO:0072045) hypoblast development(GO:0090008) |
0.2 | 1.2 | GO:0003096 | renal sodium ion transport(GO:0003096) renal sodium ion absorption(GO:0070294) |
0.2 | 1.0 | GO:0016338 | calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338) |
0.2 | 1.0 | GO:0032367 | intracellular cholesterol transport(GO:0032367) |
0.0 | 0.9 | GO:0042737 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.2 | 0.8 | GO:0006750 | glutathione biosynthetic process(GO:0006750) |
0.1 | 0.8 | GO:0017183 | peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.7 | GO:0005912 | adherens junction(GO:0005912) |
0.0 | 2.3 | GO:0005923 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.1 | 2.1 | GO:0005579 | membrane attack complex(GO:0005579) |
0.0 | 1.6 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 1.2 | GO:0016342 | catenin complex(GO:0016342) |
0.0 | 1.0 | GO:0016605 | PML body(GO:0016605) |
0.0 | 1.0 | GO:0005604 | basement membrane(GO:0005604) |
0.1 | 0.9 | GO:0001650 | fibrillar center(GO:0001650) |
0.0 | 0.8 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
0.0 | 0.8 | GO:0005747 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | GO:0019870 | chloride channel inhibitor activity(GO:0019869) potassium channel inhibitor activity(GO:0019870) |
0.0 | 1.7 | GO:0045296 | cadherin binding(GO:0045296) |
0.1 | 1.3 | GO:0047676 | arachidonate-CoA ligase activity(GO:0047676) |
0.1 | 1.2 | GO:0070697 | activin receptor binding(GO:0070697) |
0.0 | 1.1 | GO:0031267 | small GTPase binding(GO:0031267) |
0.3 | 1.0 | GO:0070259 | tyrosyl-DNA phosphodiesterase activity(GO:0070259) |
0.1 | 0.9 | GO:0030548 | acetylcholine receptor regulator activity(GO:0030548) neurotransmitter receptor regulator activity(GO:0099602) |
0.0 | 0.9 | GO:0017022 | myosin binding(GO:0017022) |
0.0 | 0.9 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.2 | 0.8 | GO:0033204 | ribonuclease P RNA binding(GO:0033204) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.0 | 1.3 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 0.8 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.6 | PID TRAIL PATHWAY | TRAIL signaling pathway |
0.0 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.4 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.3 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.0 | 0.3 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.2 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.0 | 0.8 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 0.6 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.0 | 0.6 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 0.6 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.0 | 0.6 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.0 | 0.6 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 0.5 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.0 | 0.5 | REACTOME REGULATION OF APOPTOSIS | Genes involved in Regulation of Apoptosis |
0.1 | 0.4 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |