PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfe2l2a | dr11_v1_chr9_+_1654284_1654284 | 0.80 | 3.3e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_67471375 Show fit | 4.66 |
ENSDART00000147009
|
si:dkey-251i10.2 |
|
chr5_-_30615901 Show fit | 4.66 |
ENSDART00000147769
|
si:ch211-117m20.5 |
|
chr10_-_7974155 Show fit | 3.13 |
ENSDART00000147368
ENSDART00000075524 |
oxysterol binding protein 2 |
|
chr13_+_28903959 Show fit | 2.79 |
ENSDART00000166435
|
si:ch73-28h20.1 |
|
chr19_+_8506178 Show fit | 2.72 |
ENSDART00000189689
|
S100 calcium binding protein A10a |
|
chr9_-_22076368 Show fit | 2.62 |
ENSDART00000128486
|
crystallin, gamma M2a |
|
chr6_-_35446110 Show fit | 2.55 |
ENSDART00000058773
|
regulator of G protein signaling 16 |
|
chr5_-_40297003 Show fit | 2.35 |
ENSDART00000097526
|
heat shock protein, alpha-crystallin-related, b3 |
|
chr11_+_24002503 Show fit | 2.29 |
ENSDART00000164702
|
chitinase, acidic.2 |
|
chr15_+_37559570 Show fit | 2.13 |
ENSDART00000085522
|
heat shock protein, alpha-crystallin-related, b6 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.4 | GO:0006869 | lipid transport(GO:0006869) |
0.0 | 3.0 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.1 | 2.5 | GO:1903038 | negative regulation of T cell activation(GO:0050868) negative regulation of leukocyte cell-cell adhesion(GO:1903038) |
0.0 | 2.4 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.2 | 2.3 | GO:0006032 | chitin catabolic process(GO:0006032) |
0.1 | 2.0 | GO:0098943 | neurotransmitter receptor transport, postsynaptic endosome to lysosome(GO:0098943) |
0.1 | 2.0 | GO:0070593 | dendrite self-avoidance(GO:0070593) |
0.1 | 1.8 | GO:0000272 | polysaccharide catabolic process(GO:0000272) glycogen catabolic process(GO:0005980) glucan catabolic process(GO:0009251) cellular polysaccharide catabolic process(GO:0044247) |
0.0 | 1.7 | GO:0030641 | regulation of cellular pH(GO:0030641) |
0.2 | 1.5 | GO:0061298 | retina vasculature development in camera-type eye(GO:0061298) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.1 | GO:0097038 | perinuclear endoplasmic reticulum(GO:0097038) |
0.1 | 3.0 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.2 | 2.0 | GO:0042583 | chromaffin granule(GO:0042583) |
0.1 | 2.0 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.3 | 1.8 | GO:0033181 | plasma membrane proton-transporting V-type ATPase complex(GO:0033181) |
0.1 | 1.8 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.0 | 1.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 1.6 | GO:0005882 | intermediate filament(GO:0005882) |
0.1 | 1.3 | GO:0043195 | terminal bouton(GO:0043195) |
0.0 | 1.3 | GO:0031941 | filamentous actin(GO:0031941) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.2 | GO:0015248 | sterol transporter activity(GO:0015248) |
0.1 | 3.0 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.0 | 2.8 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 2.7 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.0 | 2.7 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.0 | 2.5 | GO:0000149 | SNARE binding(GO:0000149) |
0.0 | 2.4 | GO:0042802 | identical protein binding(GO:0042802) |
0.2 | 2.3 | GO:0004568 | chitinase activity(GO:0004568) |
0.1 | 2.2 | GO:0051537 | 2 iron, 2 sulfur cluster binding(GO:0051537) |
0.0 | 2.2 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 2.0 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 1.9 | PID FOXO PATHWAY | FoxO family signaling |
0.0 | 1.2 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 1.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.5 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.5 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.1 | 0.3 | ST JAK STAT PATHWAY | Jak-STAT Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 3.1 | REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT | Genes involved in Organic cation/anion/zwitterion transport |
0.0 | 2.0 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.0 | 1.4 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 1.2 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.1 | 1.0 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.1 | 0.9 | REACTOME ADVANCED GLYCOSYLATION ENDPRODUCT RECEPTOR SIGNALING | Genes involved in Advanced glycosylation endproduct receptor signaling |
0.0 | 0.9 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.1 | 0.7 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.0 | 0.5 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |
0.0 | 0.4 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |