PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfia | dr11_v1_chr22_-_16997246_16997246 | 0.57 | 1.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_30729745 Show fit | 2.48 |
ENSDART00000103270
|
solute carrier family 22 (organic anion transporter), member 7a |
|
chr6_+_13742899 Show fit | 2.21 |
ENSDART00000104722
|
cyclin-dependent kinase 5, regulatory subunit 2a (p39) |
|
chr24_-_24038800 Show fit | 2.16 |
ENSDART00000080549
|
lysozyme |
|
chr9_-_22182396 Show fit | 2.14 |
ENSDART00000101809
|
crystallin, gamma M2d6 |
|
chr3_-_55139127 Show fit | 2.00 |
ENSDART00000115324
|
hemoglobin, alpha embryonic 1.3 |
|
chr12_+_13256415 Show fit | 1.94 |
ENSDART00000144542
|
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like |
|
chr22_+_38767780 Show fit | 1.88 |
ENSDART00000149499
|
alkaline phosphatase, intestinal, tandem duplicate 1 |
|
chr5_-_41831646 Show fit | 1.84 |
ENSDART00000134326
|
si:dkey-65b12.6 |
|
chr16_+_31802203 Show fit | 1.82 |
ENSDART00000058739
ENSDART00000110834 |
wingless-type MMTV integration site family, member 4b |
|
chr12_+_42436328 Show fit | 1.77 |
ENSDART00000167324
|
early B cell factor 3a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.8 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.0 | 3.8 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.2 | 3.4 | GO:0010717 | regulation of epithelial to mesenchymal transition(GO:0010717) |
0.1 | 2.7 | GO:0015671 | oxygen transport(GO:0015671) |
0.0 | 2.2 | GO:0055074 | calcium ion homeostasis(GO:0055074) |
0.0 | 2.0 | GO:0001503 | ossification(GO:0001503) |
0.0 | 1.9 | GO:0031101 | fin regeneration(GO:0031101) |
0.1 | 1.8 | GO:0045839 | negative regulation of mitotic nuclear division(GO:0045839) |
0.1 | 1.8 | GO:0050654 | chondroitin sulfate proteoglycan metabolic process(GO:0050654) |
0.0 | 1.8 | GO:0030866 | cortical actin cytoskeleton organization(GO:0030866) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.3 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 3.8 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 3.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 3.6 | GO:0009986 | cell surface(GO:0009986) |
0.2 | 2.7 | GO:0031838 | haptoglobin-hemoglobin complex(GO:0031838) |
0.4 | 2.2 | GO:0016533 | cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533) |
0.0 | 2.1 | GO:0005581 | collagen trimer(GO:0005581) |
0.1 | 1.9 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.0 | 1.5 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 1.4 | GO:0005579 | membrane attack complex(GO:0005579) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.0 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.1 | 5.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.2 | 2.7 | GO:0031720 | haptoglobin binding(GO:0031720) |
0.0 | 2.7 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.0 | 2.4 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.1 | 2.3 | GO:0005109 | frizzled binding(GO:0005109) |
0.5 | 2.2 | GO:0003796 | lysozyme activity(GO:0003796) |
0.2 | 2.2 | GO:0061575 | cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575) |
0.2 | 2.1 | GO:0005332 | gamma-aminobutyric acid:sodium symporter activity(GO:0005332) |
0.1 | 2.1 | GO:0005518 | collagen binding(GO:0005518) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.4 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.1 | 2.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.0 | 2.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.1 | 1.7 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.1 | 1.6 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 1.3 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 1.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 1.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 0.7 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 0.7 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.1 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.1 | 1.9 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.1 | 1.8 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.0 | 1.8 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.1 | 1.7 | REACTOME A TETRASACCHARIDE LINKER SEQUENCE IS REQUIRED FOR GAG SYNTHESIS | Genes involved in A tetrasaccharide linker sequence is required for GAG synthesis |
0.1 | 1.5 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.1 | 1.4 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 1.3 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.0 | 1.1 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 1.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |