PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfic | dr11_v1_chr8_+_20624510_20624510 | 0.58 | 1.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_+_49568335 Show fit | 2.94 |
ENSDART00000142957
|
collagen, type XVII, alpha 1a |
|
chr10_+_44042033 Show fit | 2.05 |
ENSDART00000190006
ENSDART00000046172 |
crystallin, beta A4 |
|
chr4_+_74131530 Show fit | 1.78 |
ENSDART00000174125
|
|
|
chr23_-_45504991 Show fit | 1.56 |
ENSDART00000148761
|
collagen type XXIV alpha 1 |
|
chr1_+_7546259 Show fit | 1.52 |
ENSDART00000015732
|
myosin, light polypeptide 3, skeletal muscle |
|
chr22_-_10487490 Show fit | 1.40 |
ENSDART00000064798
|
asporin (LRR class 1) |
|
chr22_-_33679277 Show fit | 1.30 |
ENSDART00000169948
|
|
|
chr1_-_44434707 Show fit | 1.27 |
ENSDART00000110148
|
crystallin, beta A1, like 2 |
|
chr5_-_37935607 Show fit | 1.20 |
ENSDART00000141233
ENSDART00000084868 ENSDART00000125857 |
sodium channel, voltage-gated, type IV, beta b |
|
chr8_-_6877390 Show fit | 1.19 |
ENSDART00000170883
ENSDART00000005321 |
neurofilament, light polypeptide b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.3 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 2.5 | GO:0008544 | epidermis development(GO:0008544) |
0.1 | 1.7 | GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen(GO:0006123) |
0.3 | 1.6 | GO:0038065 | collagen-activated tyrosine kinase receptor signaling pathway(GO:0038063) collagen-activated signaling pathway(GO:0038065) |
0.0 | 1.3 | GO:0032922 | circadian regulation of gene expression(GO:0032922) |
0.0 | 1.2 | GO:0043524 | negative regulation of neuron apoptotic process(GO:0043524) |
0.0 | 1.1 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
0.0 | 1.1 | GO:0007605 | sensory perception of sound(GO:0007605) |
0.0 | 1.0 | GO:0006817 | phosphate ion transport(GO:0006817) |
0.1 | 0.8 | GO:0005513 | detection of calcium ion(GO:0005513) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
0.5 | 1.6 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.2 | 1.2 | GO:0005883 | neurofilament(GO:0005883) |
0.1 | 1.0 | GO:0005869 | dynactin complex(GO:0005869) |
0.0 | 0.8 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.2 | 0.6 | GO:1990745 | EARP complex(GO:1990745) |
0.0 | 0.6 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 0.4 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.0 | 0.3 | GO:1990454 | L-type voltage-gated calcium channel complex(GO:1990454) |
0.0 | 0.2 | GO:0098837 | postsynaptic recycling endosome(GO:0098837) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 3.3 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 1.7 | GO:0015002 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.0 | 1.7 | GO:0005518 | collagen binding(GO:0005518) |
0.3 | 1.0 | GO:0000822 | inositol hexakisphosphate binding(GO:0000822) |
0.1 | 0.8 | GO:0050262 | ribosylnicotinamide kinase activity(GO:0050262) |
0.1 | 0.8 | GO:0008422 | beta-glucosidase activity(GO:0008422) |
0.0 | 0.8 | GO:0015269 | calcium-activated potassium channel activity(GO:0015269) |
0.0 | 0.8 | GO:0098632 | protein binding involved in cell adhesion(GO:0098631) protein binding involved in cell-cell adhesion(GO:0098632) |
0.2 | 0.7 | GO:0016748 | succinyltransferase activity(GO:0016748) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.4 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 0.6 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.4 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 1.1 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.1 | 0.8 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |
0.1 | 0.8 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.0 | 0.7 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.1 | 0.6 | REACTOME OPSINS | Genes involved in Opsins |
0.0 | 0.6 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.6 | REACTOME CELL JUNCTION ORGANIZATION | Genes involved in Cell junction organization |
0.0 | 0.4 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.0 | 0.3 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |