PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfil3-5 | dr11_v1_chr6_+_8172227_8172227 | 0.36 | 1.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_44953349 Show fit | 9.29 |
ENSDART00000135156
|
villin 1 |
|
chr20_-_1151265 Show fit | 9.11 |
ENSDART00000012376
|
gamma-aminobutyric acid (GABA) A receptor, rho 1 |
|
chr17_+_27456804 Show fit | 9.06 |
ENSDART00000017756
ENSDART00000181461 ENSDART00000180178 |
cathepsin L.1 |
|
chr25_+_34984333 Show fit | 8.34 |
ENSDART00000154760
|
coiled-coil domain containing 136b |
|
chr3_+_16612574 Show fit | 7.45 |
ENSDART00000104481
|
solute carrier family 17 (vesicular glutamate transporter), member 7a |
|
chr9_-_48736388 Show fit | 7.19 |
ENSDART00000022074
|
dehydrogenase/reductase (SDR family) member 9 |
|
chr6_-_345503 Show fit | 7.13 |
ENSDART00000168901
|
phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a |
|
chr5_+_37837245 Show fit | 7.11 |
ENSDART00000171617
|
ependymin |
|
chr25_+_15354095 Show fit | 6.70 |
ENSDART00000090397
|
KIAA1549-like a |
|
chr2_+_24177190 Show fit | 6.45 |
ENSDART00000099546
|
microtubule associated protein 4 like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.6 | 14.3 | GO:0072673 | lamellipodium morphogenesis(GO:0072673) regulation of lamellipodium morphogenesis(GO:2000392) |
0.1 | 13.4 | GO:0043547 | positive regulation of GTPase activity(GO:0043547) |
0.7 | 13.0 | GO:0042574 | retinal metabolic process(GO:0042574) |
0.9 | 11.9 | GO:0006603 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
1.3 | 10.3 | GO:0098700 | neurotransmitter loading into synaptic vesicle(GO:0098700) |
0.1 | 9.7 | GO:0006414 | translational elongation(GO:0006414) |
0.2 | 9.5 | GO:0042738 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
2.3 | 9.1 | GO:0045023 | G0 to G1 transition(GO:0045023) regulation of G0 to G1 transition(GO:0070316) negative regulation of G0 to G1 transition(GO:0070317) |
0.6 | 8.3 | GO:2000054 | negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000054) |
0.2 | 7.9 | GO:0014059 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 22.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.6 | 20.9 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 17.1 | GO:0005576 | extracellular region(GO:0005576) |
0.1 | 16.1 | GO:0005764 | lysosome(GO:0005764) |
2.9 | 14.3 | GO:0032433 | filopodium tip(GO:0032433) |
0.0 | 12.8 | GO:0043005 | neuron projection(GO:0043005) |
0.1 | 10.4 | GO:0070382 | exocytic vesicle(GO:0070382) |
0.7 | 10.3 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.2 | 9.4 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.1 | 7.8 | GO:0014069 | postsynaptic density(GO:0014069) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 24.2 | GO:0005509 | calcium ion binding(GO:0005509) |
0.6 | 20.9 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.0 | 16.5 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.3 | 14.7 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.3 | 13.9 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.9 | 11.9 | GO:0004111 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
0.8 | 10.3 | GO:0005326 | neurotransmitter transporter activity(GO:0005326) |
0.1 | 10.0 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
0.2 | 9.7 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.1 | 9.5 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.4 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.1 | 3.5 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.3 | 3.3 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.1 | 3.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.2 | 3.0 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.1 | 2.4 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.1 | 2.2 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 2.1 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.6 | PID NFKAPPAB CANONICAL PATHWAY | Canonical NF-kappaB pathway |
0.1 | 1.4 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 13.2 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.3 | 6.0 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.2 | 4.6 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.2 | 4.6 | REACTOME N GLYCAN ANTENNAE ELONGATION | Genes involved in N-Glycan antennae elongation |
0.1 | 4.6 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.1 | 4.5 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.2 | 4.3 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.3 | 4.0 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.3 | 3.7 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.1 | 3.7 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |