PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfixa | dr11_v1_chr1_+_51896147_51896147 | -0.32 | 1.9e-01 | Click! |
nfixb | dr11_v1_chr3_+_14768364_14768364 | -0.29 | 2.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_33645967 Show fit | 1.93 |
ENSDART00000192758
|
claudin g |
|
chr18_+_618005 Show fit | 1.88 |
ENSDART00000189667
|
protogenin homolog a (Gallus gallus) |
|
chr11_-_11575070 Show fit | 1.58 |
ENSDART00000142208
|
zgc:110712 |
|
chr8_-_22965214 Show fit | 1.28 |
ENSDART00000148178
|
elastin microfibril interfacer 3a |
|
chr3_+_49021079 Show fit | 1.27 |
ENSDART00000162012
|
zgc:163083 |
|
chr12_-_16595177 Show fit | 1.16 |
ENSDART00000133962
|
si:dkey-239j18.2 |
|
chr19_+_25465025 Show fit | 1.03 |
ENSDART00000018553
|
replication protein A3 |
|
chr4_+_25680480 Show fit | 1.03 |
ENSDART00000100737
|
acyl-CoA thioesterase 17 |
|
chr3_-_24681404 Show fit | 1.02 |
ENSDART00000161612
|
|
|
chr6_-_27108844 Show fit | 1.00 |
ENSDART00000073883
|
deoxythymidylate kinase (thymidylate kinase) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.9 | GO:0016338 | calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338) |
0.5 | 1.5 | GO:1902176 | regulation of oxidative stress-induced intrinsic apoptotic signaling pathway(GO:1902175) negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway(GO:1902176) |
0.0 | 1.5 | GO:0055003 | cardiac myofibril assembly(GO:0055003) |
0.4 | 1.3 | GO:0071830 | chylomicron remnant clearance(GO:0034382) triglyceride-rich lipoprotein particle clearance(GO:0071830) intermediate-density lipoprotein particle clearance(GO:0071831) |
0.0 | 1.3 | GO:0048570 | notochord morphogenesis(GO:0048570) |
0.0 | 1.1 | GO:0006637 | acyl-CoA metabolic process(GO:0006637) thioester metabolic process(GO:0035383) |
0.3 | 1.0 | GO:0009211 | pyrimidine deoxyribonucleoside triphosphate metabolic process(GO:0009211) |
0.0 | 0.9 | GO:0006298 | mismatch repair(GO:0006298) |
0.1 | 0.8 | GO:0032481 | positive regulation of type I interferon production(GO:0032481) |
0.0 | 0.8 | GO:0009411 | response to UV(GO:0009411) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | GO:0043296 | apical junction complex(GO:0043296) |
0.0 | 1.5 | GO:0005884 | actin filament(GO:0005884) |
0.3 | 1.3 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.1 | 1.0 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
0.0 | 0.8 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
0.0 | 0.8 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.1 | 0.6 | GO:0000812 | Swr1 complex(GO:0000812) |
0.1 | 0.4 | GO:0042824 | MHC class I peptide loading complex(GO:0042824) |
0.0 | 0.4 | GO:0005943 | phosphatidylinositol 3-kinase complex, class IA(GO:0005943) |
0.0 | 0.4 | GO:0019814 | immunoglobulin complex(GO:0019814) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | GO:0042802 | identical protein binding(GO:0042802) |
0.0 | 1.8 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.4 | 1.3 | GO:0043395 | heparan sulfate proteoglycan binding(GO:0043395) |
0.0 | 1.1 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
0.3 | 1.0 | GO:0009041 | uridylate kinase activity(GO:0009041) |
0.1 | 0.9 | GO:0003834 | beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436) |
0.0 | 0.9 | GO:0005518 | collagen binding(GO:0005518) |
0.0 | 0.8 | GO:0000340 | RNA 7-methylguanosine cap binding(GO:0000340) |
0.1 | 0.7 | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity(GO:0016742) |
0.0 | 0.7 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | ST T CELL SIGNAL TRANSDUCTION | T Cell Signal Transduction |
0.0 | 0.8 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 0.4 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.4 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 0.1 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.0 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.0 | 1.0 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 0.9 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.0 | 0.8 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
0.0 | 0.8 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 0.7 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 0.4 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.0 | 0.4 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.0 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 0.3 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |