PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfkb1 | dr11_v1_chr14_-_49859747_49859823 | 0.35 | 1.4e-01 | Click! |
rela | dr11_v1_chr7_-_804515_804515 | -0.34 | 1.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_-_50175069 Show fit | 2.93 |
ENSDART00000192979
|
lens intrinsic membrane protein 2.5 |
|
chr3_-_28120092 Show fit | 2.83 |
ENSDART00000151143
|
RNA binding fox-1 homolog 1 |
|
chr23_+_45579497 Show fit | 2.60 |
ENSDART00000110381
|
early growth response 4 |
|
chr2_+_42191592 Show fit | 2.27 |
ENSDART00000144716
|
caveolae associated protein 4a |
|
chr21_+_28958471 Show fit | 2.22 |
ENSDART00000144331
ENSDART00000005929 |
protein phosphatase 3, catalytic subunit, alpha isozyme |
|
chr19_+_19412692 Show fit | 2.21 |
ENSDART00000113580
|
wu:fc38h03 |
|
chr3_-_32170850 Show fit | 2.21 |
ENSDART00000055307
ENSDART00000157366 |
troponin T type 1 (skeletal, slow) |
|
chr3_+_11568523 Show fit | 2.10 |
ENSDART00000179668
|
|
|
chr25_+_37397031 Show fit | 1.95 |
ENSDART00000193643
ENSDART00000169132 |
solute carrier family 1 (glial high affinity glutamate transporter), member 2b |
|
chr1_-_30039331 Show fit | 1.74 |
ENSDART00000086935
ENSDART00000143800 |
zgc:153256 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.9 | GO:0033173 | calcineurin-NFAT signaling cascade(GO:0033173) |
0.1 | 2.5 | GO:0036444 | calcium ion transmembrane import into mitochondrion(GO:0036444) |
0.0 | 2.4 | GO:0021854 | hypothalamus development(GO:0021854) |
0.3 | 2.2 | GO:0031444 | slow-twitch skeletal muscle fiber contraction(GO:0031444) |
0.0 | 2.1 | GO:0006414 | translational elongation(GO:0006414) |
0.1 | 2.0 | GO:0008345 | larval locomotory behavior(GO:0008345) larval behavior(GO:0030537) |
0.0 | 1.8 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.6 | 1.7 | GO:1904059 | regulation of locomotor rhythm(GO:1904059) |
0.1 | 1.6 | GO:0046470 | phosphatidylcholine metabolic process(GO:0046470) |
0.4 | 1.5 | GO:0051823 | regulation of synapse structural plasticity(GO:0051823) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.3 | GO:0005955 | calcineurin complex(GO:0005955) |
0.1 | 3.0 | GO:0005901 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.2 | 2.5 | GO:1990246 | uniplex complex(GO:1990246) |
0.1 | 2.3 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 2.2 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.0 | 2.2 | GO:0005882 | intermediate filament(GO:0005882) |
0.1 | 2.1 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.1 | 1.6 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
0.1 | 1.5 | GO:0048179 | activin receptor complex(GO:0048179) |
0.1 | 1.4 | GO:0071565 | nBAF complex(GO:0071565) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.3 | GO:0033192 | calcium-dependent protein serine/threonine phosphatase activity(GO:0004723) calmodulin-dependent protein phosphatase activity(GO:0033192) |
0.0 | 3.0 | GO:0008201 | heparin binding(GO:0008201) |
0.0 | 2.9 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 2.7 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.1 | 2.4 | GO:0048020 | CCR chemokine receptor binding(GO:0048020) |
0.0 | 2.3 | GO:0015293 | symporter activity(GO:0015293) |
0.1 | 2.2 | GO:0005523 | tropomyosin binding(GO:0005523) |
0.1 | 2.1 | GO:0004622 | lysophospholipase activity(GO:0004622) |
0.1 | 2.1 | GO:1905030 | voltage-gated sodium channel activity(GO:0005248) voltage-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1905030) |
0.0 | 2.1 | GO:0003746 | translation elongation factor activity(GO:0003746) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.2 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.1 | 2.9 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 1.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 1.2 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.7 | PID IL23 PATHWAY | IL23-mediated signaling events |
0.0 | 0.4 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
0.2 | 0.2 | PID CD40 PATHWAY | CD40/CD40L signaling |
0.0 | 0.2 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.2 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.0 | 0.2 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.3 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.2 | 3.0 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION | Genes involved in TRAF6 mediated IRF7 activation |
0.1 | 3.0 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 1.5 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 1.3 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.0 | 1.2 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.0 | 1.2 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 0.9 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |
0.0 | 0.9 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.0 | 0.9 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |