PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx1.2la | dr11_v1_chr13_+_40770628_40770628 | -0.73 | 4.0e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr25_+_29160102 Show fit | 1.31 |
ENSDART00000162854
|
pyruvate kinase M1/2b |
|
chr2_+_50608099 Show fit | 0.97 |
ENSDART00000185805
ENSDART00000111135 |
neuronal differentiation 6b |
|
chr15_+_45640906 Show fit | 0.78 |
ENSDART00000149361
ENSDART00000149079 |
S-antigen; retina and pineal gland (arrestin) b |
|
chr4_+_21129752 Show fit | 0.76 |
ENSDART00000169764
|
synaptotagmin Ia |
|
chr8_+_16025554 Show fit | 0.73 |
ENSDART00000110171
|
ELAV like neuron-specific RNA binding protein 4 |
|
chr22_+_7738966 Show fit | 0.66 |
ENSDART00000147073
|
si:ch73-44m9.5 |
|
chr22_-_20011476 Show fit | 0.66 |
ENSDART00000093312
ENSDART00000093310 |
cugbp, Elav-like family member 5a |
|
chr2_-_38000276 Show fit | 0.63 |
ENSDART00000034790
|
Purkinje cell protein 4 like 1 |
|
chr18_+_21408794 Show fit | 0.57 |
ENSDART00000140161
|
N-terminal EF-hand calcium binding protein 2 |
|
chr17_-_12385308 Show fit | 0.56 |
ENSDART00000080927
|
synaptosomal-associated protein, 25b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0006096 | glycolytic process(GO:0006096) |
0.1 | 0.8 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.0 | 0.8 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.1 | 0.6 | GO:0042984 | amyloid precursor protein biosynthetic process(GO:0042983) regulation of amyloid precursor protein biosynthetic process(GO:0042984) |
0.0 | 0.6 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.1 | 0.5 | GO:0021767 | mammillary body development(GO:0021767) |
0.0 | 0.5 | GO:0003323 | type B pancreatic cell development(GO:0003323) |
0.0 | 0.5 | GO:0001878 | response to yeast(GO:0001878) |
0.0 | 0.5 | GO:0006376 | mRNA splice site selection(GO:0006376) |
0.1 | 0.4 | GO:0097428 | protein maturation by iron-sulfur cluster transfer(GO:0097428) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | GO:0030426 | growth cone(GO:0030426) |
0.2 | 0.8 | GO:0042584 | chromaffin granule membrane(GO:0042584) |
0.0 | 0.8 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.1 | 0.6 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.0 | 0.4 | GO:0044295 | axonal growth cone(GO:0044295) |
0.0 | 0.1 | GO:0019815 | B cell receptor complex(GO:0019815) |
0.0 | 0.1 | GO:0016012 | sarcoglycan complex(GO:0016012) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.3 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.0 | 0.8 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.1 | 0.5 | GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854) |
0.1 | 0.4 | GO:0008046 | axon guidance receptor activity(GO:0008046) |
0.1 | 0.4 | GO:0008508 | bile acid:sodium symporter activity(GO:0008508) |
0.0 | 0.4 | GO:0004157 | dihydropyrimidinase activity(GO:0004157) |
0.0 | 0.4 | GO:0004169 | dolichyl-phosphate-mannose-protein mannosyltransferase activity(GO:0004169) |
0.0 | 0.3 | GO:0015386 | monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386) |
0.0 | 0.3 | GO:0047623 | AMP deaminase activity(GO:0003876) adenosine-phosphate deaminase activity(GO:0047623) |
0.0 | 0.3 | GO:0015129 | lactate transmembrane transporter activity(GO:0015129) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.1 | 0.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.0 | 0.4 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.0 | 0.3 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.0 | 0.2 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 0.2 | REACTOME REGULATION OF SIGNALING BY CBL | Genes involved in Regulation of signaling by CBL |
0.0 | 0.1 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |
0.0 | 0.1 | REACTOME SEMA3A PAK DEPENDENT AXON REPULSION | Genes involved in Sema3A PAK dependent Axon repulsion |
0.0 | 0.1 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |