PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx1.2lb | dr11_v1_chr14_+_15064870_15064870 | 0.09 | 7.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_306036 Show fit | 1.80 |
ENSDART00000103659
|
mesogenin 1 |
|
chr7_-_64971839 Show fit | 0.96 |
ENSDART00000164682
|
SIN3-HDAC complex associated factor, like |
|
chr17_-_15189397 Show fit | 0.95 |
ENSDART00000133710
ENSDART00000110507 |
WD repeat and HMG-box DNA binding protein 1 |
|
chr8_-_16697615 Show fit | 0.93 |
ENSDART00000187929
|
retinal pigment epithelium-specific protein 65b |
|
chr12_-_43685802 Show fit | 0.87 |
ENSDART00000170723
|
zgc:112964 |
|
chr8_-_50888806 Show fit | 0.84 |
ENSDART00000053750
|
acyl-CoA synthetase long chain family member 2 |
|
chr8_-_20243389 Show fit | 0.82 |
ENSDART00000184904
|
alkaline ceramidase 1 |
|
chr8_-_39822917 Show fit | 0.79 |
ENSDART00000067843
|
zgc:162025 |
|
chr4_+_6032640 Show fit | 0.78 |
ENSDART00000157487
|
transcription factor EC |
|
chr20_+_36812368 Show fit | 0.77 |
ENSDART00000062931
|
ABRA C-terminal like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 1.8 | GO:0048341 | paraxial mesoderm morphogenesis(GO:0048340) paraxial mesoderm formation(GO:0048341) |
0.0 | 1.1 | GO:0043967 | histone H4 acetylation(GO:0043967) |
0.2 | 0.9 | GO:0016116 | tetraterpenoid metabolic process(GO:0016108) tetraterpenoid biosynthetic process(GO:0016109) carotenoid metabolic process(GO:0016116) carotenoid biosynthetic process(GO:0016117) xanthophyll metabolic process(GO:0016122) xanthophyll biosynthetic process(GO:0016123) zeaxanthin metabolic process(GO:1901825) zeaxanthin biosynthetic process(GO:1901827) |
0.1 | 0.9 | GO:0007339 | binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344) |
0.1 | 0.8 | GO:0097065 | anterior head development(GO:0097065) |
0.1 | 0.8 | GO:0046512 | diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512) |
0.1 | 0.8 | GO:0061484 | hematopoietic stem cell homeostasis(GO:0061484) |
0.0 | 0.8 | GO:0035338 | long-chain fatty-acyl-CoA biosynthetic process(GO:0035338) |
0.1 | 0.7 | GO:0006370 | 7-methylguanosine mRNA capping(GO:0006370) |
0.0 | 0.6 | GO:0090481 | pyrimidine nucleotide-sugar transport(GO:0015781) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | GO:0005671 | Ada2/Gcn5/Ada3 transcription activator complex(GO:0005671) |
0.0 | 0.9 | GO:0043596 | nuclear replication fork(GO:0043596) |
0.0 | 0.5 | GO:1990907 | beta-catenin-TCF complex(GO:1990907) |
0.0 | 0.3 | GO:0048500 | signal recognition particle, endoplasmic reticulum targeting(GO:0005786) signal recognition particle(GO:0048500) |
0.0 | 0.3 | GO:0005669 | transcription factor TFIID complex(GO:0005669) |
0.0 | 0.3 | GO:0005858 | axonemal dynein complex(GO:0005858) |
0.0 | 0.1 | GO:1990923 | PET complex(GO:1990923) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | GO:0004402 | histone acetyltransferase activity(GO:0004402) |
0.2 | 0.9 | GO:0052885 | retinol isomerase activity(GO:0050251) all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity(GO:0052885) |
0.1 | 0.9 | GO:0032190 | acrosin binding(GO:0032190) |
0.1 | 0.8 | GO:0017040 | ceramidase activity(GO:0017040) |
0.1 | 0.8 | GO:0047676 | arachidonate-CoA ligase activity(GO:0047676) |
0.1 | 0.7 | GO:0052629 | phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629) |
0.0 | 0.7 | GO:0000340 | RNA 7-methylguanosine cap binding(GO:0000340) |
0.1 | 0.6 | GO:0005459 | UDP-galactose transmembrane transporter activity(GO:0005459) |
0.1 | 0.5 | GO:0004576 | oligosaccharyl transferase activity(GO:0004576) dolichyl-diphosphooligosaccharide-protein glycotransferase activity(GO:0004579) |
0.0 | 0.5 | GO:0038191 | neuropilin binding(GO:0038191) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.3 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 0.2 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.3 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.0 | 0.2 | REACTOME REGULATION OF IFNG SIGNALING | Genes involved in Regulation of IFNG signaling |
0.0 | 0.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |