PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx2.1 | dr11_v1_chr17_+_38262408_38262408 | 0.69 | 1.0e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_59571758 Show fit | 1.03 |
ENSDART00000193546
ENSDART00000167087 |
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 |
|
chr20_+_48782068 Show fit | 0.97 |
ENSDART00000159275
|
NK2 homeobox 2b |
|
chr13_+_10023256 Show fit | 0.94 |
ENSDART00000110035
|
S1 RNA binding domain 1 |
|
chr5_-_54712159 Show fit | 0.85 |
ENSDART00000149207
|
cyclin B1 |
|
chr2_+_19195841 Show fit | 0.78 |
ENSDART00000163137
ENSDART00000161095 |
ELOVL fatty acid elongase 1a |
|
chr11_-_308838 Show fit | 0.65 |
ENSDART00000112538
|
POC1 centriolar protein A |
|
chr15_-_23508214 Show fit | 0.65 |
ENSDART00000115051
|
ATP-binding cassette, sub-family G (WHITE), member 4b |
|
chr4_-_2052687 Show fit | 0.61 |
ENSDART00000138291
ENSDART00000150844 |
cleavage and polyadenylation specific factor 6 |
|
chr17_+_48314724 Show fit | 0.59 |
ENSDART00000125617
|
SPARC related modular calcium binding 1 |
|
chr6_+_38880166 Show fit | 0.57 |
ENSDART00000019939
ENSDART00000144286 |
bridging integrator 2b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.1 | GO:0071800 | podosome assembly(GO:0071800) |
0.0 | 1.0 | GO:0021508 | floor plate formation(GO:0021508) floor plate morphogenesis(GO:0033505) |
0.1 | 0.8 | GO:0007080 | mitotic metaphase plate congression(GO:0007080) |
0.0 | 0.8 | GO:0034625 | fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626) |
0.2 | 0.6 | GO:0046831 | regulation of nucleobase-containing compound transport(GO:0032239) positive regulation of nucleobase-containing compound transport(GO:0032241) positive regulation of nucleocytoplasmic transport(GO:0046824) regulation of RNA export from nucleus(GO:0046831) positive regulation of RNA export from nucleus(GO:0046833) messenger ribonucleoprotein complex assembly(GO:1990120) |
0.1 | 0.6 | GO:0031087 | nuclear-transcribed mRNA catabolic process, deadenylation-independent decay(GO:0031086) deadenylation-independent decapping of nuclear-transcribed mRNA(GO:0031087) |
0.0 | 0.6 | GO:0033344 | cholesterol efflux(GO:0033344) |
0.0 | 0.6 | GO:0002072 | optic cup morphogenesis involved in camera-type eye development(GO:0002072) |
0.1 | 0.5 | GO:0090299 | regulation of neural crest formation(GO:0090299) |
0.1 | 0.5 | GO:0006167 | AMP biosynthetic process(GO:0006167) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.1 | GO:0001891 | phagocytic cup(GO:0001891) |
0.3 | 0.8 | GO:0097125 | cyclin B1-CDK1 complex(GO:0097125) |
0.2 | 0.6 | GO:0042382 | paraspeckles(GO:0042382) |
0.1 | 0.4 | GO:0071012 | U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012) |
0.0 | 0.4 | GO:0070652 | HAUS complex(GO:0070652) |
0.0 | 0.4 | GO:0036157 | outer dynein arm(GO:0036157) |
0.1 | 0.3 | GO:0002189 | ribose phosphate diphosphokinase complex(GO:0002189) |
0.1 | 0.3 | GO:0005915 | cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915) |
0.1 | 0.2 | GO:0031166 | integral component of vacuolar membrane(GO:0031166) intrinsic component of vacuolar membrane(GO:0031310) |
0.0 | 0.2 | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome(GO:0034388) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.0 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.0 | 0.8 | GO:0009922 | fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
0.0 | 0.8 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 0.6 | GO:0050840 | extracellular matrix binding(GO:0050840) |
0.1 | 0.5 | GO:0016842 | amidine-lyase activity(GO:0016842) |
0.0 | 0.5 | GO:0003726 | double-stranded RNA adenosine deaminase activity(GO:0003726) |
0.1 | 0.4 | GO:0017040 | ceramidase activity(GO:0017040) |
0.0 | 0.4 | GO:0052629 | phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629) |
0.0 | 0.4 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
0.1 | 0.3 | GO:0031434 | mitogen-activated protein kinase kinase binding(GO:0031434) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 0.4 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.3 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.0 | 0.3 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.8 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.0 | 0.6 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.0 | 0.6 | REACTOME SIGNALING BY FGFR1 FUSION MUTANTS | Genes involved in Signaling by FGFR1 fusion mutants |
0.0 | 0.5 | REACTOME P75NTR RECRUITS SIGNALLING COMPLEXES | Genes involved in p75NTR recruits signalling complexes |
0.0 | 0.5 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 0.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.1 | 0.3 | REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK | Genes involved in Negative regulation of the PI3K/AKT network |
0.0 | 0.3 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.0 | 0.3 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |