PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx2.2a | dr11_v1_chr17_-_42213822_42213822 | -0.68 | 1.3e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_+_32838110 Show fit | 2.23 |
ENSDART00000158077
|
arrestin 3b, retinal (X-arrestin) |
|
chr25_-_7974494 Show fit | 1.65 |
ENSDART00000171446
|
histidine ammonia-lyase |
|
chr7_+_50849142 Show fit | 1.62 |
ENSDART00000073806
|
procollagen C-endopeptidase enhancer b |
|
chr22_+_20720808 Show fit | 1.31 |
ENSDART00000171321
|
si:dkey-211f22.5 |
|
chr19_+_40856807 Show fit | 1.30 |
ENSDART00000139083
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 |
|
chr24_-_7699356 Show fit | 1.24 |
ENSDART00000013117
|
synaptotagmin Vb |
|
chr20_-_34090740 Show fit | 1.06 |
ENSDART00000062539
ENSDART00000008140 |
phosducin b |
|
chr14_+_32837914 Show fit | 1.05 |
ENSDART00000158888
|
arrestin 3b, retinal (X-arrestin) |
|
chr16_-_11798994 Show fit | 1.02 |
ENSDART00000135408
|
cornifelin |
|
chr9_-_22158784 Show fit | 1.02 |
ENSDART00000167850
|
crystallin, gamma M2d14 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.4 | GO:0007601 | visual perception(GO:0007601) |
0.3 | 3.3 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.6 | 1.7 | GO:0019556 | formate metabolic process(GO:0015942) histidine catabolic process to glutamate and formamide(GO:0019556) histidine catabolic process to glutamate and formate(GO:0019557) formamide metabolic process(GO:0043606) |
0.0 | 1.7 | GO:0035725 | sodium ion transmembrane transport(GO:0035725) |
0.0 | 1.5 | GO:0048841 | regulation of axon extension involved in axon guidance(GO:0048841) |
0.1 | 1.2 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.2 | 1.0 | GO:0055005 | ventricular cardiac myofibril assembly(GO:0055005) |
0.1 | 0.9 | GO:0048172 | regulation of short-term neuronal synaptic plasticity(GO:0048172) |
0.0 | 0.9 | GO:0050829 | defense response to Gram-negative bacterium(GO:0050829) |
0.0 | 0.8 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | GO:0005882 | intermediate filament(GO:0005882) |
0.1 | 1.3 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.1 | 1.2 | GO:0031045 | dense core granule(GO:0031045) |
0.1 | 0.9 | GO:0032591 | dendritic spine membrane(GO:0032591) |
0.0 | 0.9 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.0 | 0.8 | GO:0043209 | myelin sheath(GO:0043209) |
0.0 | 0.8 | GO:0032590 | neuron projection membrane(GO:0032589) dendrite membrane(GO:0032590) |
0.1 | 0.7 | GO:0071914 | prominosome(GO:0071914) |
0.0 | 0.7 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 0.6 | GO:0005883 | neurofilament(GO:0005883) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.2 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.0 | 3.0 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 3.0 | GO:0015293 | symporter activity(GO:0015293) |
0.3 | 1.7 | GO:0016841 | ammonia-lyase activity(GO:0016841) |
0.0 | 1.6 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 1.4 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.1 | 1.3 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.0 | 1.0 | GO:0005246 | calcium channel regulator activity(GO:0005246) |
0.2 | 0.9 | GO:0070891 | lipoteichoic acid binding(GO:0070891) |
0.0 | 0.9 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 0.6 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.1 | 0.4 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.0 | 0.3 | PID IL5 PATHWAY | IL5-mediated signaling events |
0.0 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.2 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.0 | 0.2 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.3 | 1.3 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.0 | 1.2 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.8 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.1 | 0.6 | REACTOME PEPTIDE HORMONE BIOSYNTHESIS | Genes involved in Peptide hormone biosynthesis |
0.0 | 0.6 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 0.6 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.0 | 0.6 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 0.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.1 | 0.3 | REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK | Genes involved in Negative regulation of the PI3K/AKT network |