PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx2.2b | dr11_v1_chr20_+_48782068_48782068 | 0.74 | 3.1e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_16595406 Show fit | 1.63 |
ENSDART00000166798
|
si:dkey-239j18.2 |
|
chr12_-_16595177 Show fit | 1.57 |
ENSDART00000133962
|
si:dkey-239j18.2 |
|
chr1_-_55248496 Show fit | 1.01 |
ENSDART00000098615
|
nanos homolog 3 |
|
chr2_-_10877228 Show fit | 0.92 |
ENSDART00000138718
ENSDART00000034246 |
cell division cycle 7 homolog (S. cerevisiae) |
|
chr12_+_6002715 Show fit | 0.91 |
ENSDART00000114961
|
si:ch211-131k2.3 |
|
chr9_-_33063083 Show fit | 0.80 |
ENSDART00000048550
|
si:ch211-125e6.5 |
|
chr3_-_16000168 Show fit | 0.68 |
ENSDART00000160628
|
NME/NM23 nucleoside diphosphate kinase 3 |
|
chr1_+_5485799 Show fit | 0.67 |
ENSDART00000022307
|
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase |
|
chr3_-_15999501 Show fit | 0.67 |
ENSDART00000160668
|
NME/NM23 nucleoside diphosphate kinase 3 |
|
chr12_-_10476448 Show fit | 0.66 |
ENSDART00000106172
|
Rac family small GTPase 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | GO:0060236 | regulation of mitotic spindle organization(GO:0060236) |
0.1 | 1.3 | GO:0006228 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.1 | 1.1 | GO:0080111 | DNA demethylation(GO:0080111) |
0.0 | 1.1 | GO:0051225 | spindle assembly(GO:0051225) |
0.3 | 1.0 | GO:0030718 | germ-line stem cell population maintenance(GO:0030718) |
0.1 | 1.0 | GO:0070934 | CRD-mediated mRNA stabilization(GO:0070934) |
0.1 | 0.9 | GO:0051131 | chaperone-mediated protein complex assembly(GO:0051131) |
0.1 | 0.9 | GO:0000727 | double-strand break repair via break-induced replication(GO:0000727) |
0.0 | 0.9 | GO:0016601 | Rac protein signal transduction(GO:0016601) |
0.0 | 0.8 | GO:0002183 | cytoplasmic translational initiation(GO:0002183) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.0 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 1.0 | GO:0070937 | CRD-mediated mRNA stability complex(GO:0070937) |
0.0 | 1.0 | GO:0043186 | P granule(GO:0043186) |
0.0 | 0.7 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.1 | 0.6 | GO:0000506 | glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506) |
0.1 | 0.6 | GO:0070652 | HAUS complex(GO:0070652) |
0.1 | 0.6 | GO:0035060 | brahma complex(GO:0035060) |
0.0 | 0.6 | GO:0097431 | mitotic spindle pole(GO:0097431) |
0.0 | 0.6 | GO:0005838 | proteasome regulatory particle(GO:0005838) |
0.0 | 0.6 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.1 | 1.5 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.0 | 1.2 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
0.2 | 1.1 | GO:0008311 | double-stranded DNA exodeoxyribonuclease activity(GO:0008309) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311) |
0.1 | 1.1 | GO:0048027 | mRNA 5'-UTR binding(GO:0048027) |
0.1 | 0.9 | GO:0051879 | Hsp90 protein binding(GO:0051879) |
0.1 | 0.7 | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity(GO:0016742) |
0.2 | 0.6 | GO:0031782 | type 3 melanocortin receptor binding(GO:0031781) type 4 melanocortin receptor binding(GO:0031782) |
0.1 | 0.6 | GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176) |
0.1 | 0.6 | GO:0030619 | U1 snRNA binding(GO:0030619) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.9 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.0 | 0.6 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 0.6 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 0.5 | PID ATM PATHWAY | ATM pathway |
0.0 | 0.5 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 0.4 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.2 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
0.0 | 0.2 | PID WNT NONCANONICAL PATHWAY | Noncanonical Wnt signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | REACTOME BASE FREE SUGAR PHOSPHATE REMOVAL VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Base-free sugar-phosphate removal via the single-nucleotide replacement pathway |
0.0 | 1.1 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
0.0 | 1.0 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.0 | 0.9 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.0 | 0.7 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 0.6 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.0 | 0.6 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
0.0 | 0.6 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.1 | 0.5 | REACTOME THE NLRP3 INFLAMMASOME | Genes involved in The NLRP3 inflammasome |
0.0 | 0.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |