PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx2.7 | dr11_v1_chr8_-_50287949_50287949 | -0.62 | 4.2e-03 | Click! |
nkx2.3 | dr11_v1_chr13_-_40411908_40411917 | 0.13 | 6.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_30244356 Show fit | 3.32 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr1_+_44439661 Show fit | 3.04 |
ENSDART00000100309
|
crystallin, beta B1, like 2 |
|
chr12_+_15008582 Show fit | 2.65 |
ENSDART00000003847
|
myosin light chain, phosphorylatable, fast skeletal muscle b |
|
chr10_-_7756865 Show fit | 2.64 |
ENSDART00000114373
ENSDART00000125407 ENSDART00000016317 |
lysyl oxidase a |
|
chr10_+_26800213 Show fit | 2.52 |
ENSDART00000078996
|
arrestin 3a, retinal (X-arrestin) |
|
chr6_+_41181869 Show fit | 2.43 |
ENSDART00000002046
|
opsin 1 (cone pigments), medium-wave-sensitive, 1 |
|
chr6_+_3828560 Show fit | 2.19 |
ENSDART00000185273
ENSDART00000179091 |
glutamate decarboxylase 1b |
|
chr25_+_31277415 Show fit | 2.16 |
ENSDART00000036275
|
troponin I type 2a (skeletal, fast), tandem duplicate 4 |
|
chr13_-_40401870 Show fit | 2.16 |
ENSDART00000128951
|
NK3 homeobox 3 |
|
chr21_+_7582036 Show fit | 2.08 |
ENSDART00000135485
ENSDART00000027268 |
orthopedia homeobox a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.2 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
1.3 | 3.8 | GO:0009449 | gamma-aminobutyric acid biosynthetic process(GO:0009449) |
0.1 | 3.6 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 3.0 | GO:0021884 | forebrain neuron development(GO:0021884) |
0.2 | 2.5 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.1 | 2.4 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.2 | 2.3 | GO:0015721 | bile acid and bile salt transport(GO:0015721) |
0.1 | 2.3 | GO:0018057 | peptidyl-lysine oxidation(GO:0018057) |
0.2 | 2.2 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.1 | 2.2 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.3 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 3.1 | GO:0043679 | axon terminus(GO:0043679) |
0.3 | 2.9 | GO:0042583 | chromaffin granule(GO:0042583) |
0.0 | 2.5 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.0 | 2.4 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 1.9 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.1 | 1.8 | GO:0045277 | respiratory chain complex IV(GO:0045277) |
0.3 | 1.7 | GO:0043083 | synaptic cleft(GO:0043083) |
0.3 | 1.7 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.0 | 1.7 | GO:0031941 | filamentous actin(GO:0031941) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.2 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
1.3 | 3.8 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
0.1 | 2.8 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.1 | 2.7 | GO:0017080 | sodium channel regulator activity(GO:0017080) |
0.4 | 2.4 | GO:0008508 | bile acid:sodium symporter activity(GO:0008508) |
0.1 | 2.3 | GO:0004720 | protein-lysine 6-oxidase activity(GO:0004720) |
0.0 | 2.3 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.1 | 2.2 | GO:0016675 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.1 | 2.0 | GO:0019003 | GDP binding(GO:0019003) |
0.1 | 1.9 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.9 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.1 | 1.5 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.0 | 1.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 1.0 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 1.0 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 1.0 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 0.9 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.7 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 0.3 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.0 | 0.3 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 2.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.2 | 1.9 | REACTOME INSULIN RECEPTOR RECYCLING | Genes involved in Insulin receptor recycling |
0.1 | 1.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.0 | 1.5 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.0 | 1.3 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.1 | 1.2 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 1.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.1 | 1.1 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.0 | 1.1 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.1 | 1.0 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |