PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx3-1 | dr11_v1_chr8_-_50259448_50259448 | -0.42 | 7.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_22680560 Show fit | 0.99 |
ENSDART00000133761
|
plac8 onzin related protein 4 |
|
chr9_-_22158325 Show fit | 0.97 |
ENSDART00000114568
|
crystallin, gamma M2d16 |
|
chr9_-_22158784 Show fit | 0.95 |
ENSDART00000167850
|
crystallin, gamma M2d14 |
|
chr14_-_33894915 Show fit | 0.92 |
ENSDART00000143290
|
urotensin-related peptide 1 |
|
chr1_-_26293203 Show fit | 0.85 |
ENSDART00000180140
|
CXXC finger 4 |
|
chr21_+_10828828 Show fit | 0.79 |
ENSDART00000136449
|
O-acyltransferase like |
|
chr5_-_64883082 Show fit | 0.76 |
ENSDART00000064983
ENSDART00000139066 |
keratin, type 1, gene c5 |
|
chr11_-_30636163 Show fit | 0.65 |
ENSDART00000140516
|
zgc:153665 |
|
chr22_-_11626014 Show fit | 0.62 |
ENSDART00000063133
ENSDART00000160085 |
glucagon a |
|
chr5_+_38276582 Show fit | 0.59 |
ENSDART00000158532
|
guanine nucleotide binding protein (G protein), beta polypeptide 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 0.9 | GO:0003323 | type B pancreatic cell development(GO:0003323) |
0.0 | 0.6 | GO:0006891 | intra-Golgi vesicle-mediated transport(GO:0006891) |
0.1 | 0.5 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
0.1 | 0.5 | GO:0030718 | germ-line stem cell population maintenance(GO:0030718) |
0.0 | 0.5 | GO:0046051 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.0 | 0.5 | GO:0032438 | melanosome organization(GO:0032438) |
0.0 | 0.5 | GO:0035141 | medial fin morphogenesis(GO:0035141) |
0.0 | 0.5 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.1 | 0.4 | GO:0070070 | proton-transporting V-type ATPase complex assembly(GO:0070070) vacuolar proton-transporting V-type ATPase complex assembly(GO:0070072) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
0.0 | 0.4 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
0.0 | 0.4 | GO:0008540 | proteasome regulatory particle, base subcomplex(GO:0008540) |
0.1 | 0.3 | GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098) |
0.0 | 0.3 | GO:0005682 | U5 snRNP(GO:0005682) |
0.0 | 0.3 | GO:0043186 | P granule(GO:0043186) |
0.1 | 0.2 | GO:0097124 | cyclin A2-CDK2 complex(GO:0097124) |
0.0 | 0.2 | GO:0005588 | collagen type V trimer(GO:0005588) |
0.0 | 0.2 | GO:1990923 | PET complex(GO:1990923) |
0.0 | 0.2 | GO:0048500 | signal recognition particle, endoplasmic reticulum targeting(GO:0005786) signal recognition particle(GO:0048500) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 1.4 | GO:0008327 | methyl-CpG binding(GO:0008327) |
0.2 | 1.0 | GO:0031769 | glucagon receptor binding(GO:0031769) |
0.0 | 0.6 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
0.1 | 0.5 | GO:0004084 | branched-chain-amino-acid transaminase activity(GO:0004084) L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
0.0 | 0.5 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
0.0 | 0.5 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.0 | 0.5 | GO:0004806 | triglyceride lipase activity(GO:0004806) |
0.1 | 0.4 | GO:0036402 | proteasome-activating ATPase activity(GO:0036402) |
0.1 | 0.4 | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.2 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.2 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 0.2 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE | Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline |
0.0 | 0.6 | REACTOME P53 INDEPENDENT G1 S DNA DAMAGE CHECKPOINT | Genes involved in p53-Independent G1/S DNA damage checkpoint |
0.0 | 0.5 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.0 | 0.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.4 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.0 | 0.3 | REACTOME KERATAN SULFATE BIOSYNTHESIS | Genes involved in Keratan sulfate biosynthesis |
0.0 | 0.3 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.0 | 0.2 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.0 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
0.0 | 0.2 | REACTOME SCFSKP2 MEDIATED DEGRADATION OF P27 P21 | Genes involved in SCF(Skp2)-mediated degradation of p27/p21 |