PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx3.2 | dr11_v1_chr14_-_215051_215051 | 0.31 | 2.0e-01 | Click! |
nkx3.3 | dr11_v1_chr13_-_40401870_40401870 | -0.21 | 3.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_16636627 Show fit | 4.12 |
ENSDART00000128811
|
si:dkey-239j18.3 |
|
chr17_+_51746830 Show fit | 2.13 |
ENSDART00000184230
|
ornithine decarboxylase 1 |
|
chr23_-_21471022 Show fit | 2.08 |
ENSDART00000104206
|
hairy-related 4, tandem duplicate 2 |
|
chr23_+_25292147 Show fit | 1.97 |
ENSDART00000131486
|
proliferation-associated 2G4, b |
|
chr20_-_25643667 Show fit | 1.83 |
ENSDART00000137457
|
si:dkeyp-117h8.4 |
|
chr6_+_13201358 Show fit | 1.73 |
ENSDART00000190290
|
|
|
chr11_+_14333441 Show fit | 1.69 |
ENSDART00000171969
|
polypyrimidine tract binding protein 1b |
|
chr1_-_51710225 Show fit | 1.62 |
ENSDART00000057601
ENSDART00000152745 |
small nuclear ribonucleoprotein polypeptide B2 |
|
chr10_+_13209580 Show fit | 1.44 |
ENSDART00000000887
ENSDART00000136932 |
Ras association (RalGDS/AF-6) domain family 6 |
|
chr7_+_20917966 Show fit | 1.40 |
ENSDART00000129161
|
WD repeat containing, antisense to TP53 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.1 | GO:0033387 | putrescine biosynthetic process from ornithine(GO:0033387) |
0.1 | 2.1 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.5 | 1.4 | GO:0035019 | somatic stem cell population maintenance(GO:0035019) symmetric cell division(GO:0098725) |
0.3 | 1.4 | GO:0030575 | nuclear body organization(GO:0030575) Cajal body organization(GO:0030576) |
0.1 | 1.2 | GO:0072698 | protein localization to microtubule cytoskeleton(GO:0072698) |
0.2 | 1.1 | GO:0097094 | regulation of osteoblast proliferation(GO:0033688) craniofacial suture morphogenesis(GO:0097094) |
0.0 | 1.0 | GO:0002098 | tRNA wobble uridine modification(GO:0002098) |
0.2 | 0.9 | GO:0097355 | protein localization to heterochromatin(GO:0097355) |
0.1 | 0.9 | GO:0040016 | embryonic cleavage(GO:0040016) |
0.0 | 0.9 | GO:1901800 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.1 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 1.6 | GO:0005685 | U1 snRNP(GO:0005685) |
0.1 | 1.4 | GO:0015030 | Cajal body(GO:0015030) |
0.0 | 1.2 | GO:0072686 | mitotic spindle(GO:0072686) |
0.1 | 1.0 | GO:0033588 | Elongator holoenzyme complex(GO:0033588) |
0.1 | 1.0 | GO:0031080 | nuclear pore outer ring(GO:0031080) |
0.0 | 0.9 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.0 | 0.9 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.0 | 0.9 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.1 | 0.8 | GO:0042645 | nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.2 | 2.1 | GO:0004586 | ornithine decarboxylase activity(GO:0004586) |
0.2 | 1.6 | GO:0030619 | U1 snRNA binding(GO:0030619) |
0.1 | 1.4 | GO:0005112 | Notch binding(GO:0005112) |
0.0 | 1.0 | GO:0001968 | fibronectin binding(GO:0001968) |
0.1 | 0.9 | GO:0047429 | nucleoside-triphosphate diphosphatase activity(GO:0047429) |
0.1 | 0.9 | GO:0035250 | UDP-galactosyltransferase activity(GO:0035250) |
0.0 | 0.8 | GO:0004364 | glutathione transferase activity(GO:0004364) |
0.2 | 0.7 | GO:0030623 | U5 snRNA binding(GO:0030623) |
0.2 | 0.7 | GO:0046923 | ER retention sequence binding(GO:0046923) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 1.5 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.0 | 1.4 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 0.9 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.8 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
0.0 | 0.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.1 | 2.1 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.2 | 1.4 | REACTOME RECEPTOR LIGAND BINDING INITIATES THE SECOND PROTEOLYTIC CLEAVAGE OF NOTCH RECEPTOR | Genes involved in Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor |
0.0 | 1.4 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.0 | 1.0 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.0 | 0.9 | REACTOME A TETRASACCHARIDE LINKER SEQUENCE IS REQUIRED FOR GAG SYNTHESIS | Genes involved in A tetrasaccharide linker sequence is required for GAG synthesis |
0.0 | 0.9 | REACTOME KINESINS | Genes involved in Kinesins |
0.1 | 0.8 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.0 | 0.8 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
0.0 | 0.7 | REACTOME SIGNAL TRANSDUCTION BY L1 | Genes involved in Signal transduction by L1 |