PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx6.1 | dr11_v1_chr21_+_19070921_19070921 | -0.74 | 2.9e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_30244356 Show fit | 10.81 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr1_-_43905252 Show fit | 8.39 |
ENSDART00000135477
ENSDART00000132089 |
si:dkey-22i16.3 |
|
chr20_-_40755614 Show fit | 6.06 |
ENSDART00000061247
|
connexin 32.3 |
|
chr3_-_50443607 Show fit | 5.59 |
ENSDART00000074036
|
recoverin a |
|
chr25_+_29160102 Show fit | 5.56 |
ENSDART00000162854
|
pyruvate kinase M1/2b |
|
chr5_-_30620625 Show fit | 5.55 |
ENSDART00000098273
|
transcobalamin like |
|
chr5_-_23362602 Show fit | 5.50 |
ENSDART00000137120
|
glutamate receptor, ionotropic, AMPA 3a |
|
chr7_+_14291323 Show fit | 4.97 |
ENSDART00000053521
|
Rh family, C glycoprotein a |
|
chr23_+_40460333 Show fit | 4.71 |
ENSDART00000184658
|
SOGA family member 3b |
|
chr16_+_46111849 Show fit | 4.52 |
ENSDART00000172232
|
synaptic vesicle glycoprotein 2A |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 9.0 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.1 | 7.3 | GO:0032869 | cellular response to insulin stimulus(GO:0032869) |
0.1 | 5.9 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.0 | 5.5 | GO:0006836 | neurotransmitter transport(GO:0006836) |
0.6 | 5.0 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
0.5 | 4.9 | GO:1904071 | presynaptic active zone assembly(GO:1904071) |
0.1 | 4.0 | GO:0048488 | synaptic vesicle endocytosis(GO:0048488) |
0.0 | 4.0 | GO:0042391 | regulation of membrane potential(GO:0042391) |
1.3 | 3.8 | GO:0071236 | cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237) |
0.7 | 3.7 | GO:0016322 | neuron remodeling(GO:0016322) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 20.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.0 | 15.8 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 9.0 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.2 | 6.9 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.1 | 5.9 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 5.8 | GO:0030424 | axon(GO:0030424) |
0.1 | 5.0 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.5 | 4.9 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.1 | 4.3 | GO:0043679 | axon terminus(GO:0043679) neuron projection terminus(GO:0044306) |
0.6 | 3.7 | GO:0043083 | synaptic cleft(GO:0043083) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.3 | GO:0005509 | calcium ion binding(GO:0005509) |
0.9 | 5.6 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.4 | 5.5 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.0 | 5.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.2 | 5.0 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
0.3 | 4.9 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.1 | 4.9 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.1 | 4.2 | GO:0008195 | phosphatidate phosphatase activity(GO:0008195) |
0.3 | 4.1 | GO:0008503 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.3 | 4.0 | GO:0005504 | fatty acid binding(GO:0005504) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.5 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.2 | 3.0 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.1 | 2.4 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 2.4 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 2.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 2.3 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 1.8 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.1 | 1.6 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.1 | 1.5 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 1.1 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 6.8 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 5.8 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.1 | 4.0 | REACTOME TRANSPORT OF GLUCOSE AND OTHER SUGARS BILE SALTS AND ORGANIC ACIDS METAL IONS AND AMINE COMPOUNDS | Genes involved in Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds |
0.1 | 3.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.1 | 3.0 | REACTOME N GLYCAN ANTENNAE ELONGATION | Genes involved in N-Glycan antennae elongation |
0.3 | 2.9 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.2 | 2.3 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
0.2 | 2.1 | REACTOME PKA MEDIATED PHOSPHORYLATION OF CREB | Genes involved in PKA-mediated phosphorylation of CREB |
0.2 | 2.0 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.1 | 1.8 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |