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PRJEB1986: zebrafish developmental stages transcriptome

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Results for noto+vax1

Z-value: 0.24

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Transcription factors associated with noto+vax1

Gene Symbol Gene ID Gene Info
noto
ENSDARG00000021201 notochord homeobox
vax1
ENSDARG00000021916 ventral anterior homeobox 1
vax1
ENSDARG00000114230 ventral anterior homeobox 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
notodr11_v1_chr13_+_14976108_14976108-0.761.5e-04Click!
vax1dr11_v1_chr17_-_21441464_21441464-0.464.6e-02Click!

Activity profile of noto+vax1 motif

Sorted Z-values of noto+vax1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr9_-_22310919 1.28 ENSDART00000108719
crygm2d10
crystallin, gamma M2d10
chr3_-_50443607 1.00 ENSDART00000074036
rcvrna
recoverin a
chr14_+_46313396 0.67 ENSDART00000047525
cryba1l1
crystallin, beta A1, like 1
chr14_+_46313135 0.56 ENSDART00000172902
cryba1l1
crystallin, beta A1, like 1
chr1_-_50859053 0.54 ENSDART00000132779
ENSDART00000137648
si:dkeyp-123h10.2
si:dkeyp-123h10.2
chr6_+_40354424 0.54 ENSDART00000047416
slc4a8
solute carrier family 4, sodium bicarbonate cotransporter, member 8
chr2_+_50608099 0.50 ENSDART00000185805
ENSDART00000111135
neurod6b
neuronal differentiation 6b
chr2_+_55982300 0.49 ENSDART00000183903
nmrk2
nicotinamide riboside kinase 2
chr19_-_6988837 0.48 ENSDART00000145741
ENSDART00000167640
znf384l
zinc finger protein 384 like
chr23_-_1348933 0.46 ENSDART00000168981
CABZ01078120.1

chr18_+_5137241 0.46 ENSDART00000159601
serpini1
serpin peptidase inhibitor, clade I (neuroserpin), member 1
chr4_+_21129752 0.37 ENSDART00000169764
syt1a
synaptotagmin Ia
chr2_+_56265791 0.37 ENSDART00000168335
homer3a
homer scaffolding protein 3a
chr16_+_31804590 0.37 ENSDART00000167321
wnt4b
wingless-type MMTV integration site family, member 4b
chr7_-_27685365 0.37 ENSDART00000188342
calca
calcitonin/calcitonin-related polypeptide, alpha
chr16_-_13818061 0.36 ENSDART00000132982
ENSDART00000144856
leng9
leukocyte receptor cluster (LRC) member 9
chr22_-_21897203 0.36 ENSDART00000158501
ENSDART00000105566
ENSDART00000136795
gna11a
guanine nucleotide binding protein (G protein), alpha 11a (Gq class)
chr11_+_43043171 0.33 ENSDART00000180344
CABZ01092982.1

chr10_+_29698467 0.33 ENSDART00000163402
dlg2
discs, large homolog 2 (Drosophila)
chr19_-_2861444 0.32 ENSDART00000169053
clec3bb
C-type lectin domain family 3, member Bb
chr21_+_8427059 0.30 ENSDART00000143151
dennd1a
DENN/MADD domain containing 1A
chr20_-_14925281 0.30 ENSDART00000152641
dnm3a
dynamin 3a
chr19_+_9295244 0.29 ENSDART00000132255
ENSDART00000144299
si:ch73-15n24.1
si:ch73-15n24.1
chr21_-_37790727 0.28 ENSDART00000162907
gabrb4
gamma-aminobutyric acid (GABA) A receptor, beta 4
chr9_-_14683574 0.28 ENSDART00000144022
pard3bb
par-3 family cell polarity regulator beta b
chr15_+_44366556 0.27 ENSDART00000133449
GUCY1A2
guanylate cyclase 1 soluble subunit alpha 2
chr13_+_15190677 0.27 ENSDART00000142240
ENSDART00000129045
mavs
mitochondrial antiviral signaling protein
chr12_+_47446158 0.27 ENSDART00000152857
fmn2b
formin 2b
chr6_-_30954268 0.25 ENSDART00000154523
pde4ba
phosphodiesterase 4B, cAMP-specific a
chr16_+_13818500 0.24 ENSDART00000135245
flcn
folliculin
chr9_-_5263947 0.23 ENSDART00000088342
cytip
cytohesin 1 interacting protein
chr7_+_65261576 0.23 ENSDART00000169566
bco1
beta-carotene oxygenase 1
chr12_+_20352400 0.20 ENSDART00000066383
hbae5
hemoglobin, alpha embryonic 5
chr14_+_51056605 0.20 ENSDART00000159639
CABZ01078593.1

chr20_-_46362606 0.19 ENSDART00000153087
bmf2
BCL2 modifying factor 2
chr20_-_18382708 0.18 ENSDART00000170864
ENSDART00000166762
ENSDART00000191333
vipas39
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
chr15_-_38154616 0.17 ENSDART00000099392
irgq2
immunity-related GTPase family, q2
chr20_-_14924858 0.17 ENSDART00000047039
dnm3a
dynamin 3a
chr6_-_57539141 0.17 ENSDART00000156967
itcha
itchy E3 ubiquitin protein ligase a
chr10_-_26744131 0.17 ENSDART00000020096
ENSDART00000162710
ENSDART00000179853
fgf13b
fibroblast growth factor 13b
chr5_+_30635309 0.16 ENSDART00000183769
abcg4a
ATP-binding cassette, sub-family G (WHITE), member 4a
chr24_-_31425799 0.15 ENSDART00000157998
cngb3.1
cyclic nucleotide gated channel beta 3, tandem duplicate 1
chr18_+_3332999 0.14 ENSDART00000160857
gdpd4a
glycerophosphodiester phosphodiesterase domain containing 4a
chr4_+_74929427 0.14 ENSDART00000174082
nup50
nucleoporin 50
chr19_+_32401278 0.13 ENSDART00000184353
atxn1a
ataxin 1a
chr10_-_33621739 0.13 ENSDART00000142655
ENSDART00000128049
hunk
hormonally up-regulated Neu-associated kinase
chr3_-_34084387 0.13 ENSDART00000155365
ighv4-3
immunoglobulin heavy variable 4-3
chr18_-_43884044 0.11 ENSDART00000087382
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6
chr6_+_3280939 0.11 ENSDART00000151359
kdm4aa
lysine (K)-specific demethylase 4A, genome duplicate a
chr25_+_2361721 0.11 ENSDART00000172905
zmp:0000000932
zmp:0000000932
chr16_+_45425181 0.11 ENSDART00000168591
phf1
PHD finger protein 1
chr15_-_22074315 0.11 ENSDART00000149830
drd2a
dopamine receptor D2a
chr22_-_30770751 0.11 ENSDART00000172115
AL831726.2

chr8_-_12403077 0.10 ENSDART00000142150
phf19
PHD finger protein 19
chr3_-_32902138 0.09 ENSDART00000144026
ENSDART00000083874
ENSDART00000145443
ENSDART00000148239
ENSDART00000134917
kat7a
K(lysine) acetyltransferase 7a
chr11_-_42554290 0.09 ENSDART00000130573
atp6ap1la
ATPase H+ transporting accessory protein 1 like a
chr12_+_30265802 0.08 ENSDART00000182412
afap1l2
actin filament associated protein 1-like 2
chr25_-_4713461 0.08 ENSDART00000155302
drd4a
dopamine receptor D4a
chr2_-_39558643 0.08 ENSDART00000139860
ENSDART00000145231
ENSDART00000141721
cbln7
cerebellin 7
chr6_-_19271210 0.08 ENSDART00000163628
ENSDART00000159124
zgc:174863
zgc:174863
chr10_-_2524917 0.07 ENSDART00000188642
CU856539.1

chr14_+_30762131 0.07 ENSDART00000145039
si:ch211-145o7.3
si:ch211-145o7.3
chr3_-_61065055 0.07 ENSDART00000074199
cacng1b
calcium channel, voltage-dependent, gamma subunit 1b
chr6_+_6924637 0.07 ENSDART00000065551
ENSDART00000151393
zak
sterile alpha motif and leucine zipper containing kinase AZK
chr2_-_2957970 0.07 ENSDART00000162505
si:ch1073-82l19.1
si:ch1073-82l19.1
chr14_-_4145594 0.07 ENSDART00000077348
casp3b
caspase 3, apoptosis-related cysteine peptidase b
chr15_+_31899312 0.07 ENSDART00000155315
frya
furry homolog a (Drosophila)
chr18_-_2727764 0.06 ENSDART00000160841
ARHGEF17
si:ch211-248g20.5
chr22_-_8388678 0.06 ENSDART00000184389
CABZ01061498.1

chr4_+_73085993 0.06 ENSDART00000165749
si:ch73-170d6.2
si:ch73-170d6.2
chr16_+_11834516 0.06 ENSDART00000146611
cxcr3.3
chemokine (C-X-C motif) receptor 3, tandem duplicate 3
chr19_-_7690975 0.06 ENSDART00000151384
si:dkey-204a24.10
si:dkey-204a24.10
chr15_-_2726662 0.05 ENSDART00000108856
si:ch211-235m3.5
si:ch211-235m3.5
chr7_-_12464412 0.05 ENSDART00000178723
adamtsl3
ADAMTS-like 3
chr4_-_45100253 0.04 ENSDART00000163870
si:dkey-51d8.3
si:dkey-51d8.3
chr18_-_2433011 0.04 ENSDART00000181922
ENSDART00000193276
CR769778.1

chr11_-_13107106 0.04 ENSDART00000184477
elovl1b
ELOVL fatty acid elongase 1b
chr23_-_1658980 0.04 ENSDART00000186227
CU693481.1

chr16_-_7828838 0.04 ENSDART00000191434
ENSDART00000108653
tcaim
T cell activation inhibitor, mitochondrial
chr12_+_34891529 0.03 ENSDART00000015643
tbcc
tubulin folding cofactor C
chr17_+_43908428 0.03 ENSDART00000180332
msh4
mutS homolog 4
chr22_-_2959005 0.03 ENSDART00000040701
ing5a
inhibitor of growth family, member 5a
chr15_+_5088210 0.02 ENSDART00000183423
mxf
myxovirus (influenza virus) resistance F
chr17_-_3815693 0.01 ENSDART00000161207
PLCB4
phospholipase C beta 4
chr1_-_513762 0.01 ENSDART00000148162
ENSDART00000144606
trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit
chr12_+_22580579 0.01 ENSDART00000171725
ENSDART00000192290
capgb
capping protein (actin filament), gelsolin-like b
chr8_+_25034544 0.01 ENSDART00000123300
ngrn
neugrin, neurite outgrowth associated
chr15_+_31701716 0.01 ENSDART00000113370
b3glcta
beta 3-glucosyltransferase a
chr24_-_3783497 0.00 ENSDART00000158354
adarb2
adenosine deaminase, RNA-specific, B2 (non-functional)
chr2_+_33382648 0.00 ENSDART00000137207
ENSDART00000098831
slc6a9
solute carrier family 6 (neurotransmitter transporter, glycine), member 9

Network of associatons between targets according to the STRING database.

First level regulatory network of noto+vax1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.0 GO:0036368 cone photoresponse recovery(GO:0036368)
0.1 0.3 GO:0051660 establishment of centrosome localization(GO:0051660)
0.1 0.3 GO:0098586 cytoplasmic pattern recognition receptor signaling pathway in response to virus(GO:0039528) cellular response to virus(GO:0098586)
0.1 0.4 GO:2001256 regulation of store-operated calcium entry(GO:2001256)
0.0 0.2 GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway(GO:0030511) positive regulation of cellular response to transforming growth factor beta stimulus(GO:1903846)
0.0 0.1 GO:0032637 interleukin-8 production(GO:0032637) regulation of interleukin-8 production(GO:0032677) positive regulation of interleukin-8 production(GO:0032757)
0.0 0.5 GO:0098884 postsynaptic neurotransmitter receptor internalization(GO:0098884)
0.0 0.2 GO:0042214 carotene metabolic process(GO:0016119) carotene catabolic process(GO:0016121) terpene metabolic process(GO:0042214) terpene catabolic process(GO:0046247)
0.0 0.5 GO:0060158 phospholipase C-activating dopamine receptor signaling pathway(GO:0060158)
0.0 0.5 GO:0015701 bicarbonate transport(GO:0015701)
0.0 2.5 GO:0002088 lens development in camera-type eye(GO:0002088)
0.0 0.4 GO:0048791 calcium ion-regulated exocytosis of neurotransmitter(GO:0048791)
0.0 0.3 GO:0010923 negative regulation of phosphatase activity(GO:0010923)
0.0 0.1 GO:0061577 calcium ion transmembrane transport via high voltage-gated calcium channel(GO:0061577) regulation of calcium ion transmembrane transport via high voltage-gated calcium channel(GO:1902514)
0.0 0.1 GO:0034063 stress granule assembly(GO:0034063)
0.0 0.1 GO:0055107 Golgi to secretory granule transport(GO:0055107)
0.0 0.3 GO:0006198 cAMP catabolic process(GO:0006198)
0.0 0.2 GO:1905150 regulation of voltage-gated sodium channel activity(GO:1905150)
0.0 0.4 GO:0055064 chloride ion homeostasis(GO:0055064)
0.0 0.4 GO:0045839 negative regulation of mitotic nuclear division(GO:0045839)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0042584 chromaffin granule membrane(GO:0042584)
0.0 0.5 GO:0098844 postsynaptic endocytic zone membrane(GO:0098844)
0.0 0.2 GO:0031838 haptoglobin-hemoglobin complex(GO:0031838)
0.0 0.1 GO:0033181 plasma membrane proton-transporting V-type ATPase complex(GO:0033181)
0.0 0.3 GO:0031594 neuromuscular junction(GO:0031594)
0.0 0.1 GO:1990454 L-type voltage-gated calcium channel complex(GO:1990454)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0031716 calcitonin receptor binding(GO:0031716)
0.1 0.4 GO:0035256 G-protein coupled glutamate receptor binding(GO:0035256)
0.1 0.5 GO:0050262 ribosylnicotinamide kinase activity(GO:0050262)
0.0 0.4 GO:0031826 type 2A serotonin receptor binding(GO:0031826)
0.0 0.5 GO:0008510 sodium:bicarbonate symporter activity(GO:0008510)
0.0 2.5 GO:0005212 structural constituent of eye lens(GO:0005212)
0.0 0.2 GO:0003834 beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436)
0.0 0.2 GO:0031720 haptoglobin binding(GO:0031720)
0.0 0.1 GO:0042169 SH2 domain binding(GO:0042169)
0.0 0.2 GO:0001591 dopamine neurotransmitter receptor activity, coupled via Gi/Go(GO:0001591)
0.0 0.2 GO:0005221 intracellular cyclic nucleotide activated cation channel activity(GO:0005221) intracellular cAMP activated cation channel activity(GO:0005222) intracellular cGMP activated cation channel activity(GO:0005223) cyclic nucleotide-gated ion channel activity(GO:0043855)
0.0 0.3 GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity(GO:0004115)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY Genes involved in TRAF3-dependent IRF activation pathway
0.0 0.4 REACTOME AMYLOIDS Genes involved in Amyloids
0.0 0.3 REACTOME NITRIC OXIDE STIMULATES GUANYLATE CYCLASE Genes involved in Nitric oxide stimulates guanylate cyclase