PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr1d2a | dr11_v1_chr16_+_50089417_50089417 | 0.92 | 3.2e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_+_13244149 Show fit | 4.02 |
ENSDART00000186984
ENSDART00000105896 |
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like |
|
chr15_+_19682013 Show fit | 3.94 |
ENSDART00000127368
|
si:dkey-4p15.5 |
|
chr5_-_11573490 Show fit | 3.62 |
ENSDART00000109577
|
|
|
chr17_-_6738538 Show fit | 3.48 |
ENSDART00000157125
|
visinin-like 1b |
|
chr23_+_19564392 Show fit | 3.36 |
ENSDART00000144746
|
ATPase H+ transporting accessory protein 1 like b |
|
chr2_+_31804582 Show fit | 3.12 |
ENSDART00000086646
|
ring finger protein 182 |
|
chr3_+_1016404 Show fit | 3.09 |
ENSDART00000189545
|
si:ch1073-464p5.5 |
|
chr18_+_907266 Show fit | 3.03 |
ENSDART00000171729
|
pyruvate kinase M1/2a |
|
chr3_+_35298078 Show fit | 3.01 |
ENSDART00000110126
|
calcium channel, voltage-dependent, gamma subunit 3b |
|
chr25_+_6306885 Show fit | 2.91 |
ENSDART00000142705
ENSDART00000067510 |
cellular retinoic acid binding protein 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 7.4 | GO:0090382 | phagosome maturation(GO:0090382) |
0.0 | 4.9 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.5 | 4.8 | GO:0046247 | carotene metabolic process(GO:0016119) carotene catabolic process(GO:0016121) terpene metabolic process(GO:0042214) terpene catabolic process(GO:0046247) |
0.1 | 3.4 | GO:0030641 | regulation of cellular pH(GO:0030641) |
0.2 | 3.0 | GO:0098943 | neurotransmitter receptor transport, postsynaptic endosome to lysosome(GO:0098943) |
0.1 | 3.0 | GO:0006096 | glycolytic process(GO:0006096) |
0.6 | 2.9 | GO:0034653 | diterpenoid catabolic process(GO:0016103) terpenoid catabolic process(GO:0016115) retinoic acid catabolic process(GO:0034653) |
0.1 | 2.8 | GO:0050879 | multicellular organismal movement(GO:0050879) musculoskeletal movement(GO:0050881) |
0.0 | 2.7 | GO:0035249 | synaptic transmission, glutamatergic(GO:0035249) |
0.0 | 2.3 | GO:0007249 | I-kappaB kinase/NF-kappaB signaling(GO:0007249) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.7 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.0 | 5.7 | GO:0031012 | extracellular matrix(GO:0031012) |
0.4 | 5.4 | GO:0033162 | melanosome membrane(GO:0033162) chitosome(GO:0045009) |
0.0 | 4.5 | GO:0009986 | cell surface(GO:0009986) |
0.1 | 4.0 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.6 | 3.4 | GO:0033181 | plasma membrane proton-transporting V-type ATPase complex(GO:0033181) |
0.0 | 2.2 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 2.2 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.0 | 2.1 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 2.0 | GO:0045335 | phagocytic vesicle(GO:0045335) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.9 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 5.1 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
0.3 | 4.9 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
0.5 | 4.8 | GO:0003834 | beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436) |
0.5 | 3.0 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.0 | 3.0 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.4 | 2.9 | GO:0001972 | retinoic acid binding(GO:0001972) |
0.1 | 2.7 | GO:1904315 | neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential(GO:0099529) transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1904315) |
0.0 | 2.2 | GO:0020037 | heme binding(GO:0020037) |
0.3 | 2.1 | GO:0016647 | oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor(GO:0016647) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 1.2 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
0.1 | 1.1 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
0.0 | 1.0 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
0.0 | 0.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.7 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 0.5 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 1.9 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.1 | 1.7 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 1.1 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |
0.1 | 1.0 | REACTOME REGULATION OF KIT SIGNALING | Genes involved in Regulation of KIT signaling |
0.0 | 0.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.8 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.0 | 0.7 | REACTOME CIRCADIAN CLOCK | Genes involved in Circadian Clock |
0.0 | 0.5 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 0.4 | REACTOME SYNTHESIS OF PIPS AT THE PLASMA MEMBRANE | Genes involved in Synthesis of PIPs at the plasma membrane |