PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr2c1 | dr11_v1_chr4_-_25858620_25858620 | -0.73 | 3.7e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_26017360 Show fit | 2.35 |
ENSDART00000149466
|
protease, serine, 59, tandem duplicate 2 |
|
chr10_-_44027391 Show fit | 2.31 |
ENSDART00000145404
|
crystallin, beta B1 |
|
chr16_+_26012569 Show fit | 2.30 |
ENSDART00000148846
|
protease, serine, 59, tandem duplicate 1 |
|
chr15_+_19797918 Show fit | 1.73 |
ENSDART00000113314
|
si:ch211-229d2.5 |
|
chr23_-_39636195 Show fit | 1.42 |
ENSDART00000144439
|
von Willebrand factor A domain containing 1 |
|
chr7_+_73332486 Show fit | 1.41 |
ENSDART00000174119
ENSDART00000092051 ENSDART00000192388 |
|
|
chr2_+_38039857 Show fit | 1.39 |
ENSDART00000159951
|
calsequestrin 1a |
|
chr23_-_45504991 Show fit | 1.33 |
ENSDART00000148761
|
collagen type XXIV alpha 1 |
|
chr13_-_303137 Show fit | 1.21 |
ENSDART00000099131
|
chitin synthase 1 |
|
chr5_-_23280098 Show fit | 1.20 |
ENSDART00000126540
ENSDART00000051533 |
proteolipid protein 1b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.6 | 1.9 | GO:0009750 | response to fructose(GO:0009750) |
0.5 | 1.4 | GO:0014722 | regulation of skeletal muscle contraction by calcium ion signaling(GO:0014722) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809) |
0.2 | 1.2 | GO:1901073 | chitin biosynthetic process(GO:0006031) glucosamine-containing compound biosynthetic process(GO:1901073) |
0.1 | 1.2 | GO:0022010 | central nervous system myelination(GO:0022010) axon ensheathment in central nervous system(GO:0032291) |
0.2 | 1.1 | GO:0009052 | pentose-phosphate shunt, non-oxidative branch(GO:0009052) |
0.2 | 1.1 | GO:0038063 | collagen-activated tyrosine kinase receptor signaling pathway(GO:0038063) collagen-activated signaling pathway(GO:0038065) |
0.0 | 0.9 | GO:0031114 | regulation of microtubule depolymerization(GO:0031114) |
0.1 | 0.8 | GO:0098700 | neurotransmitter loading into synaptic vesicle(GO:0098700) |
0.1 | 0.7 | GO:0009446 | putrescine biosynthetic process(GO:0009446) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.4 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
0.4 | 1.3 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.2 | 1.2 | GO:0030428 | cell septum(GO:0030428) |
0.1 | 1.2 | GO:0043209 | myelin sheath(GO:0043209) |
0.1 | 0.8 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.0 | 0.7 | GO:0005901 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.1 | 0.5 | GO:0071914 | prominosome(GO:0071914) |
0.0 | 0.4 | GO:0005964 | phosphorylase kinase complex(GO:0005964) |
0.0 | 0.4 | GO:0031430 | M band(GO:0031430) |
0.0 | 0.4 | GO:0030667 | secretory granule membrane(GO:0030667) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 2.8 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 2.7 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 1.9 | GO:0019200 | carbohydrate kinase activity(GO:0019200) |
0.2 | 1.2 | GO:0004100 | chitin synthase activity(GO:0004100) |
0.1 | 1.2 | GO:0019911 | structural constituent of myelin sheath(GO:0019911) |
0.2 | 1.1 | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups(GO:0016744) |
0.1 | 0.8 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.1 | 0.8 | GO:0005326 | neurotransmitter transporter activity(GO:0005326) |
0.1 | 0.8 | GO:0003995 | acyl-CoA dehydrogenase activity(GO:0003995) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.0 | 1.0 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 0.7 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.0 | 0.7 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.0 | 0.5 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.0 | 0.4 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.0 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
0.0 | 0.1 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |