PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr2c2 | dr11_v1_chr8_+_53120278_53120278 | -0.60 | 6.3e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_-_45705525 Show fit | 5.99 |
ENSDART00000148959
|
endothelin receptor type Ab |
|
chr4_-_16451375 Show fit | 5.65 |
ENSDART00000192700
ENSDART00000128835 |
wu:fc23c09 |
|
chr21_-_44512893 Show fit | 4.27 |
ENSDART00000166853
|
zgc:136410 |
|
chr16_-_5115993 Show fit | 3.58 |
ENSDART00000138654
|
ttk protein kinase |
|
chr24_-_1021318 Show fit | 3.26 |
ENSDART00000181403
|
v-ral simian leukemia viral oncogene homolog Aa (ras related) |
|
chr22_-_7050 Show fit | 3.11 |
ENSDART00000127829
|
ATPase family, AAA domain containing 3 |
|
chr4_+_12031958 Show fit | 2.99 |
ENSDART00000044154
|
troponin T2c, cardiac |
|
chr14_+_989733 Show fit | 2.99 |
ENSDART00000161487
ENSDART00000127317 |
si:ch73-308l14.2 |
|
chr19_-_8534985 Show fit | 2.94 |
ENSDART00000191064
|
dolichyl-phosphate mannosyltransferase polypeptide 3 |
|
chr8_+_15251448 Show fit | 2.66 |
ENSDART00000063717
|
zgc:171480 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.5 | GO:0006271 | DNA strand elongation involved in DNA replication(GO:0006271) |
0.9 | 6.0 | GO:0003319 | cardioblast migration to the midline involved in heart rudiment formation(GO:0003319) |
0.1 | 4.5 | GO:0060048 | cardiac muscle contraction(GO:0060048) |
1.2 | 3.6 | GO:1905133 | meiotic cell cycle phase transition(GO:0044771) metaphase/anaphase transition of meiotic cell cycle(GO:0044785) regulation of meiotic cell cycle phase transition(GO:1901993) negative regulation of meiotic cell cycle phase transition(GO:1901994) regulation of metaphase/anaphase transition of meiotic cell cycle(GO:1902102) negative regulation of metaphase/anaphase transition of meiotic cell cycle(GO:1902103) regulation of meiotic chromosome separation(GO:1905132) negative regulation of meiotic chromosome separation(GO:1905133) |
0.1 | 3.5 | GO:0006506 | GPI anchor biosynthetic process(GO:0006506) |
0.0 | 3.5 | GO:0006979 | response to oxidative stress(GO:0006979) |
0.9 | 3.4 | GO:0045041 | positive regulation of interleukin-6 production(GO:0032755) protein import into mitochondrial intermembrane space(GO:0045041) |
0.0 | 3.4 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
0.2 | 2.9 | GO:0006474 | N-terminal protein amino acid acetylation(GO:0006474) |
0.0 | 2.8 | GO:1990573 | potassium ion import across plasma membrane(GO:1990573) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.0 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.1 | 4.1 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.1 | 3.6 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
0.0 | 3.4 | GO:0000776 | kinetochore(GO:0000776) |
1.0 | 2.9 | GO:0033185 | dolichol-phosphate-mannose synthase complex(GO:0033185) |
0.2 | 2.9 | GO:0042555 | MCM complex(GO:0042555) |
0.9 | 2.7 | GO:0070545 | PeBoW complex(GO:0070545) |
0.4 | 2.5 | GO:0035517 | PR-DUB complex(GO:0035517) |
0.1 | 2.4 | GO:0005861 | troponin complex(GO:0005861) |
0.5 | 2.3 | GO:0043625 | delta DNA polymerase complex(GO:0043625) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.3 | GO:0030246 | carbohydrate binding(GO:0030246) |
0.9 | 6.0 | GO:0004962 | endothelin receptor activity(GO:0004962) |
0.1 | 4.9 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.1 | 4.7 | GO:0051087 | chaperone binding(GO:0051087) |
0.1 | 4.2 | GO:0004712 | protein serine/threonine/tyrosine kinase activity(GO:0004712) |
0.0 | 3.6 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.7 | 3.5 | GO:0047066 | phospholipid-hydroperoxide glutathione peroxidase activity(GO:0047066) |
0.1 | 3.3 | GO:0019003 | GDP binding(GO:0019003) |
0.3 | 3.0 | GO:0031013 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.2 | 2.8 | GO:0015272 | ATP-activated inward rectifier potassium channel activity(GO:0015272) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.8 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 2.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.8 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 1.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 1.5 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 1.3 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 1.2 | PID PS1 PATHWAY | Presenilin action in Notch and Wnt signaling |
0.0 | 0.9 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.0 | 0.8 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.8 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.2 | 2.9 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.2 | 2.9 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.1 | 2.4 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
0.2 | 2.3 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.1 | 2.0 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.1 | 1.8 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 1.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 1.5 | REACTOME SEMA4D IN SEMAPHORIN SIGNALING | Genes involved in Sema4D in semaphorin signaling |
0.2 | 1.4 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |