PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr2e1 | dr11_v1_chr20_-_32446406_32446406 | 0.33 | 1.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_9246018 Show fit | 1.49 |
ENSDART00000081769
ENSDART00000183189 |
sushi domain containing 1 |
|
chr25_-_32381642 Show fit | 1.34 |
ENSDART00000133872
ENSDART00000006124 |
COP9 signalosome subunit 2 |
|
chr1_-_33645967 Show fit | 1.27 |
ENSDART00000192758
|
claudin g |
|
chr8_-_50287949 Show fit | 1.11 |
ENSDART00000023639
|
NK2 transcription factor related 7 |
|
chr22_+_22302614 Show fit | 0.89 |
ENSDART00000049434
|
secretory carrier membrane protein 4 |
|
chr23_+_44497701 Show fit | 0.88 |
ENSDART00000149903
|
si:ch73-375g18.1 |
|
chr10_+_10351685 Show fit | 0.87 |
ENSDART00000109432
|
cerebral endothelial cell adhesion molecule |
|
chr4_-_64482414 Show fit | 0.82 |
ENSDART00000159000
|
zinc finger protein 1105 |
|
chr13_-_35892051 Show fit | 0.81 |
ENSDART00000145884
|
transforming, acidic coiled-coil containing protein 3 |
|
chr4_+_69577362 Show fit | 0.81 |
ENSDART00000160913
|
zinc finger protein 1030 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | GO:0006334 | nucleosome assembly(GO:0006334) |
0.3 | 1.3 | GO:0000338 | protein deneddylation(GO:0000338) |
0.3 | 1.3 | GO:0016338 | calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338) |
0.4 | 1.2 | GO:0007585 | respiratory gaseous exchange(GO:0007585) regulation of respiratory gaseous exchange(GO:0043576) |
0.1 | 1.1 | GO:0003207 | cardiac chamber formation(GO:0003207) |
0.0 | 1.0 | GO:0007052 | mitotic spindle organization(GO:0007052) |
0.1 | 0.8 | GO:0051122 | lipoxygenase pathway(GO:0019372) linoleic acid metabolic process(GO:0043651) hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122) |
0.2 | 0.7 | GO:0051044 | positive regulation of membrane protein ectodomain proteolysis(GO:0051044) |
0.1 | 0.7 | GO:0072103 | renal system vasculature morphogenesis(GO:0061438) kidney vasculature morphogenesis(GO:0061439) glomerulus vasculature morphogenesis(GO:0072103) glomerular capillary formation(GO:0072104) |
0.1 | 0.7 | GO:0043951 | negative regulation of cAMP-mediated signaling(GO:0043951) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | GO:0005871 | kinesin complex(GO:0005871) |
0.3 | 1.4 | GO:0033186 | CAF-1 complex(GO:0033186) |
0.1 | 1.3 | GO:0008180 | COP9 signalosome(GO:0008180) |
0.0 | 1.3 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.0 | 0.9 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.2 | 0.7 | GO:0071065 | alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex(GO:0071065) |
0.0 | 0.7 | GO:0005643 | nuclear pore(GO:0005643) |
0.1 | 0.6 | GO:0016586 | RSC complex(GO:0016586) |
0.1 | 0.5 | GO:0070765 | gamma-secretase complex(GO:0070765) |
0.0 | 0.5 | GO:0000178 | exosome (RNase complex)(GO:0000178) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.3 | 1.3 | GO:0019784 | NEDD8-specific protease activity(GO:0019784) |
0.2 | 1.2 | GO:0004392 | heme oxygenase (decyclizing) activity(GO:0004392) |
0.0 | 1.1 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.2 | 0.9 | GO:0050211 | procollagen galactosyltransferase activity(GO:0050211) |
0.0 | 0.8 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
0.1 | 0.7 | GO:0005105 | type 1 fibroblast growth factor receptor binding(GO:0005105) |
0.0 | 0.7 | GO:0002020 | protease binding(GO:0002020) |
0.1 | 0.6 | GO:0060182 | apelin receptor activity(GO:0060182) |
0.1 | 0.6 | GO:0004024 | alcohol dehydrogenase activity, zinc-dependent(GO:0004024) S-(hydroxymethyl)glutathione dehydrogenase activity(GO:0051903) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | PID AURORA A PATHWAY | Aurora A signaling |
0.0 | 0.6 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.5 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 0.5 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.5 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.0 | 0.2 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
0.0 | 0.6 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.0 | 0.6 | REACTOME KINESINS | Genes involved in Kinesins |
0.0 | 0.6 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.1 | 0.5 | REACTOME SIGNALING BY NOTCH4 | Genes involved in Signaling by NOTCH4 |
0.0 | 0.5 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.0 | 0.5 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.0 | 0.3 | REACTOME TANDEM PORE DOMAIN POTASSIUM CHANNELS | Genes involved in Tandem pore domain potassium channels |
0.0 | 0.3 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.0 | 0.3 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |