PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr2e3 | dr11_v1_chr25_+_22274642_22274642 | 0.52 | 2.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_-_8374950 Show fit | 2.25 |
ENSDART00000057101
|
aerolysin-like protein |
|
chr7_-_18554603 Show fit | 2.24 |
ENSDART00000108938
|
Myb/SANT-like DNA-binding domain containing 1 |
|
chr9_+_34350025 Show fit | 1.97 |
ENSDART00000183451
|
POU class 2 homeobox 1b |
|
chr6_+_49255706 Show fit | 1.90 |
ENSDART00000156866
|
si:dkey-183k8.2 |
|
chr6_+_13201358 Show fit | 1.86 |
ENSDART00000190290
|
|
|
chr21_-_26495700 Show fit | 1.68 |
ENSDART00000109379
|
CD248 molecule, endosialin b |
|
chr23_+_21459263 Show fit | 1.58 |
ENSDART00000104209
|
hairy-related 4, tandem duplicate 3 |
|
chr4_+_4816695 Show fit | 1.53 |
ENSDART00000136962
|
solute carrier family 13 (sodium/sulfate symporter), member 4 |
|
chr6_-_12314475 Show fit | 1.44 |
ENSDART00000156898
ENSDART00000157058 |
si:dkey-276j7.1 |
|
chr20_-_29498178 Show fit | 1.41 |
ENSDART00000152986
ENSDART00000027851 ENSDART00000152954 |
ribonucleotide reductase M2 polypeptide |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 2.8 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.0 | 2.5 | GO:0042742 | defense response to bacterium(GO:0042742) |
0.0 | 2.1 | GO:0006637 | acyl-CoA metabolic process(GO:0006637) thioester metabolic process(GO:0035383) |
0.2 | 2.0 | GO:1904491 | protein localization to ciliary transition zone(GO:1904491) |
0.6 | 1.8 | GO:0021519 | optic cup formation involved in camera-type eye development(GO:0003408) spinal cord association neuron specification(GO:0021519) |
0.4 | 1.8 | GO:0061549 | sympathetic ganglion development(GO:0061549) |
0.0 | 1.7 | GO:0006376 | mRNA splice site selection(GO:0006376) |
0.0 | 1.7 | GO:0000281 | mitotic cytokinesis(GO:0000281) |
0.1 | 1.5 | GO:0071712 | ER-associated misfolded protein catabolic process(GO:0071712) |
0.1 | 1.5 | GO:0007339 | binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.8 | GO:0016604 | nuclear body(GO:0016604) |
0.0 | 3.5 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 2.4 | GO:0036038 | MKS complex(GO:0036038) |
0.1 | 2.3 | GO:0046930 | pore complex(GO:0046930) |
0.0 | 1.8 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.0 | 1.8 | GO:0030139 | endocytic vesicle(GO:0030139) |
0.0 | 1.6 | GO:0005814 | centriole(GO:0005814) |
0.0 | 1.6 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
0.0 | 1.6 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.0 | 1.5 | GO:0016592 | mediator complex(GO:0016592) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 21.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.0 | 3.8 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
0.4 | 2.8 | GO:0061731 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.0 | 2.5 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 2.4 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.8 | 2.3 | GO:0048030 | disaccharide binding(GO:0048030) |
0.6 | 1.7 | GO:1990430 | extracellular matrix protein binding(GO:1990430) |
0.2 | 1.7 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
0.1 | 1.7 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
0.1 | 1.6 | GO:0008327 | methyl-CpG binding(GO:0008327) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.3 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 2.1 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 2.1 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 2.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
0.1 | 1.9 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 1.5 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.0 | 1.5 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.2 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 1.1 | PID CDC42 PATHWAY | CDC42 signaling events |
0.1 | 1.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.0 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 2.8 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 2.3 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.1 | 1.8 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.1 | 1.4 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.0 | 1.3 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.1 | 1.2 | REACTOME ANDROGEN BIOSYNTHESIS | Genes involved in Androgen biosynthesis |
0.1 | 1.2 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.0 | 1.2 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.0 | 1.2 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |