PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr2f1a | dr11_v1_chr5_+_49744713_49744713 | -0.80 | 4.2e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_35068036 Show fit | 4.23 |
ENSDART00000022139
|
zgc:136461 |
|
chr13_-_12581388 Show fit | 2.30 |
ENSDART00000079655
|
glutamyl aminopeptidase |
|
chr21_+_25226558 Show fit | 2.24 |
ENSDART00000168480
|
syncollin, tandem duplicate 2 |
|
chr16_+_26012569 Show fit | 2.22 |
ENSDART00000148846
|
protease, serine, 59, tandem duplicate 1 |
|
chr1_-_50838160 Show fit | 1.90 |
ENSDART00000163939
ENSDART00000165111 |
zgc:154142 |
|
chr10_-_11385155 Show fit | 1.85 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr3_+_7771420 Show fit | 1.84 |
ENSDART00000156809
ENSDART00000156309 |
hook microtubule-tethering protein 2 |
|
chr23_+_42434348 Show fit | 1.65 |
ENSDART00000161027
|
cytochrome P450, family 2, subfamily AA, polypeptide 1 |
|
chr7_-_24005268 Show fit | 1.62 |
ENSDART00000173608
|
si:dkey-183c6.9 |
|
chr11_-_8167799 Show fit | 1.57 |
ENSDART00000133574
ENSDART00000024046 ENSDART00000146940 |
urate oxidase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | GO:0031122 | cytoplasmic microtubule organization(GO:0031122) |
0.1 | 2.3 | GO:0043171 | peptide catabolic process(GO:0043171) |
0.0 | 2.1 | GO:0042738 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.6 | 1.7 | GO:0009750 | response to fructose(GO:0009750) |
0.4 | 1.6 | GO:0006549 | isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097) |
0.0 | 1.5 | GO:0034976 | response to endoplasmic reticulum stress(GO:0034976) |
0.4 | 1.4 | GO:0046654 | tetrahydrofolate biosynthetic process(GO:0046654) |
0.3 | 1.4 | GO:0006651 | diacylglycerol biosynthetic process(GO:0006651) |
0.3 | 1.4 | GO:1901073 | chitin biosynthetic process(GO:0006031) glucosamine-containing compound biosynthetic process(GO:1901073) |
0.1 | 1.4 | GO:0060971 | embryonic heart tube left/right pattern formation(GO:0060971) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.6 | GO:0030667 | secretory granule membrane(GO:0030667) |
0.0 | 2.8 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.0 | 2.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 1.9 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.0 | 1.8 | GO:0034707 | chloride channel complex(GO:0034707) |
0.5 | 1.6 | GO:0005948 | acetolactate synthase complex(GO:0005948) |
0.2 | 1.4 | GO:0030428 | cell septum(GO:0030428) |
0.2 | 1.3 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
0.1 | 1.3 | GO:0097038 | perinuclear endoplasmic reticulum(GO:0097038) |
0.1 | 1.2 | GO:0098844 | postsynaptic endocytic zone membrane(GO:0098844) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 4.1 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.0 | 2.7 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.3 | 2.5 | GO:0004035 | alkaline phosphatase activity(GO:0004035) |
0.1 | 2.3 | GO:0070006 | metalloaminopeptidase activity(GO:0070006) |
0.0 | 2.2 | GO:0015293 | symporter activity(GO:0015293) |
0.0 | 1.9 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.0 | 1.9 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 1.8 | GO:0051959 | dynein light intermediate chain binding(GO:0051959) |
0.0 | 1.7 | GO:0003678 | DNA helicase activity(GO:0003678) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.0 | 1.3 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.1 | 1.2 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.0 | 0.7 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 0.5 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
0.0 | 0.5 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.0 | 0.5 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.0 | 0.5 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 0.4 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.0 | 0.4 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.4 | REACTOME TRIGLYCERIDE BIOSYNTHESIS | Genes involved in Triglyceride Biosynthesis |
0.0 | 1.2 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 1.1 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.1 | 1.0 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.0 | 1.0 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.1 | 0.9 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
0.0 | 0.9 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.0 | 0.9 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 0.9 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.3 | 0.8 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |