PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
nr2f1b
|
ENSDARG00000017168 | nuclear receptor subfamily 2, group F, member 1b |
nr2f5
|
ENSDARG00000033172 | nuclear receptor subfamily 2, group F, member 5 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr2f5 | dr11_v1_chr16_+_46294337_46294337 | 0.19 | 4.3e-01 | Click! |
nr2f1b | dr11_v1_chr10_+_43797130_43797130 | 0.10 | 6.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_+_25581627 | 0.30 |
ENSDART00000030229
|
cyp2p9
|
cytochrome P450, family 2, subfamily P, polypeptide 9 |
chr14_+_2487672 | 0.26 |
ENSDART00000170629
ENSDART00000123063 |
fgf18a
|
fibroblast growth factor 18a |
chr22_-_26834043 | 0.24 |
ENSDART00000087202
|
si:dkey-44g23.5
|
si:dkey-44g23.5 |
chr19_-_48039400 | 0.24 |
ENSDART00000166748
ENSDART00000165921 |
csf3b
|
colony stimulating factor 3 (granulocyte) b |
chr11_+_6010177 | 0.19 |
ENSDART00000170047
ENSDART00000022526 ENSDART00000161001 ENSDART00000188999 |
gtpbp3
|
GTP binding protein 3, mitochondrial |
chr1_+_144284 | 0.17 |
ENSDART00000064061
|
prozb
|
protein Z, vitamin K-dependent plasma glycoprotein b |
chr10_-_29831944 | 0.17 |
ENSDART00000063923
ENSDART00000136264 |
zpr1
|
ZPR1 zinc finger |
chr1_+_59154521 | 0.17 |
ENSDART00000130089
ENSDART00000152456 |
soul5l
|
heme-binding protein soul5, like |
chr19_+_26828502 | 0.16 |
ENSDART00000183654
ENSDART00000126006 ENSDART00000185341 |
FP085398.1
|
|
chr22_+_37888249 | 0.15 |
ENSDART00000076082
|
fetub
|
fetuin B |
chr25_+_1591964 | 0.14 |
ENSDART00000093277
|
ppm1h
|
protein phosphatase, Mg2+/Mn2+ dependent, 1H |
chr18_+_7073130 | 0.14 |
ENSDART00000101216
ENSDART00000148947 |
si:dkey-88e18.2
|
si:dkey-88e18.2 |
chr23_+_36616717 | 0.14 |
ENSDART00000042701
ENSDART00000192980 |
pip4k2ca
|
phosphatidylinositol-5-phosphate 4-kinase, type II, gamma a |
chr7_+_27251376 | 0.13 |
ENSDART00000173521
ENSDART00000173962 |
sox6
|
SRY (sex determining region Y)-box 6 |
chr16_-_40155424 | 0.13 |
ENSDART00000191763
|
BX470182.2
|
|
chr3_-_19517462 | 0.12 |
ENSDART00000162027
|
CU571315.2
|
|
chr24_-_22003031 | 0.12 |
ENSDART00000133627
|
si:rp71-1f1.5
|
si:rp71-1f1.5 |
chr2_+_58841181 | 0.12 |
ENSDART00000164102
|
cirbpa
|
cold inducible RNA binding protein a |
chr8_+_23711842 | 0.11 |
ENSDART00000128783
|
ppardb
|
peroxisome proliferator-activated receptor delta b |
chr24_-_21991770 | 0.11 |
ENSDART00000147296
|
si:rp71-1f1.4
|
si:rp71-1f1.4 |
chr5_+_64856666 | 0.10 |
ENSDART00000050863
|
zgc:101858
|
zgc:101858 |
chr2_-_9607879 | 0.10 |
ENSDART00000056899
|
txndc12
|
thioredoxin domain containing 12 (endoplasmic reticulum) |
chr2_+_16449627 | 0.10 |
ENSDART00000005381
|
zgc:110269
|
zgc:110269 |
chr7_-_26446726 | 0.10 |
ENSDART00000173607
|
zgc:172079
|
zgc:172079 |
chr4_-_13613148 | 0.09 |
ENSDART00000067164
ENSDART00000111247 |
irf5
|
interferon regulatory factor 5 |
chr18_-_27316599 | 0.09 |
ENSDART00000028294
|
zgc:56106
|
zgc:56106 |
chr24_+_37700259 | 0.09 |
ENSDART00000066556
|
zmp:0000000624
|
zmp:0000000624 |
chr4_-_77120928 | 0.08 |
ENSDART00000174154
|
CU467646.1
|
|
chr7_+_4474880 | 0.08 |
ENSDART00000143528
|
si:dkey-83f18.14
|
si:dkey-83f18.14 |
chr13_-_23007813 | 0.08 |
ENSDART00000057638
|
hk1
|
hexokinase 1 |
chr7_+_29153018 | 0.07 |
ENSDART00000138065
|
tmppe
|
transmembrane protein with metallophosphoesterase domain |
chr15_-_41756454 | 0.07 |
ENSDART00000139498
ENSDART00000099302 |
ftr72
|
finTRIM family, member 72 |
chr20_-_16906623 | 0.07 |
ENSDART00000012859
ENSDART00000171628 |
psma6b
|
proteasome subunit alpha 6b |
chr19_+_7938121 | 0.07 |
ENSDART00000140053
ENSDART00000146649 |
si:dkey-266f7.5
|
si:dkey-266f7.5 |
chr4_-_2440175 | 0.06 |
ENSDART00000058059
|
OSBPL8
|
oxysterol binding protein like 8 |
chr13_+_24834199 | 0.06 |
ENSDART00000101274
|
zgc:153981
|
zgc:153981 |
chr4_-_71983381 | 0.06 |
ENSDART00000169130
|
ftr64
|
finTRIM family, member 64 |
chr22_+_18316144 | 0.06 |
ENSDART00000137985
|
gatad2ab
|
GATA zinc finger domain containing 2Ab |
chr13_+_50778187 | 0.06 |
ENSDART00000159597
|
dntt
|
deoxynucleotidyltransferase, terminal |
chr19_+_5291935 | 0.06 |
ENSDART00000141237
|
si:dkeyp-113d7.10
|
si:dkeyp-113d7.10 |
chr11_-_34147205 | 0.06 |
ENSDART00000173216
|
atp13a3
|
ATPase 13A3 |
chr17_+_5351922 | 0.06 |
ENSDART00000105394
|
runx2a
|
runt-related transcription factor 2a |
chr5_-_40292299 | 0.06 |
ENSDART00000097525
|
snx18a
|
sorting nexin 18a |
chr1_-_20824411 | 0.05 |
ENSDART00000182810
|
tll1
|
tolloid-like 1 |
chr1_-_18772241 | 0.05 |
ENSDART00000147645
ENSDART00000133194 ENSDART00000147525 ENSDART00000191493 |
tbc1d1
|
TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 |
chr9_+_500052 | 0.05 |
ENSDART00000166707
|
CU984600.1
|
|
chr14_+_34558480 | 0.05 |
ENSDART00000075170
|
pttg1
|
pituitary tumor-transforming 1 |
chr18_-_49283058 | 0.05 |
ENSDART00000076554
|
si:zfos-464b6.2
|
si:zfos-464b6.2 |
chr5_+_25084385 | 0.05 |
ENSDART00000134526
ENSDART00000111863 |
paxx
|
PAXX, non-homologous end joining factor |
chr25_-_10791437 | 0.05 |
ENSDART00000127054
|
BX572619.1
|
|
chr17_-_53282539 | 0.05 |
ENSDART00000164953
|
FO704905.1
|
|
chr7_-_28565230 | 0.05 |
ENSDART00000028887
|
tmem9b
|
TMEM9 domain family, member B |
chr4_+_73215536 | 0.05 |
ENSDART00000174290
|
LO018260.2
|
Danio rerio protein NLRC3-like (LOC101883187), mRNA. |
chr8_-_13471916 | 0.04 |
ENSDART00000146558
|
pimr105
|
Pim proto-oncogene, serine/threonine kinase, related 105 |
chr14_+_46118834 | 0.04 |
ENSDART00000124417
ENSDART00000017785 |
naa15a
|
N(alpha)-acetyltransferase 15, NatA auxiliary subunit a |
chr23_+_31245395 | 0.04 |
ENSDART00000053588
|
irak1bp1
|
interleukin-1 receptor-associated kinase 1 binding protein 1 |
chr2_-_1468258 | 0.04 |
ENSDART00000114431
|
gpaa1
|
glycosylphosphatidylinositol anchor attachment 1 |
chr8_-_13428740 | 0.04 |
ENSDART00000131826
|
CR354547.3
|
|
chr8_-_13419049 | 0.04 |
ENSDART00000133656
|
pimr101
|
Pim proto-oncogene, serine/threonine kinase, related 101 |
chr5_+_54400971 | 0.04 |
ENSDART00000169695
|
bspry
|
B-box and SPRY domain containing |
chr22_+_344763 | 0.03 |
ENSDART00000181934
|
CU914780.1
|
|
chr1_+_56229674 | 0.03 |
ENSDART00000127714
|
c3a.2
|
complement component c3a, duplicate 2 |
chr2_-_16449504 | 0.03 |
ENSDART00000144801
|
atr
|
ATR serine/threonine kinase |
chr4_+_1722899 | 0.03 |
ENSDART00000021139
|
fgfr1op2
|
FGFR1 oncogene partner 2 |
chr8_-_13454281 | 0.03 |
ENSDART00000141959
|
CR354547.2
|
|
chr24_-_22015751 | 0.03 |
ENSDART00000147055
|
si:rp71-1f1.6
|
si:rp71-1f1.6 |
chr24_-_28259127 | 0.03 |
ENSDART00000149589
|
prkag2a
|
protein kinase, AMP-activated, gamma 2 non-catalytic subunit a |
chr8_-_13442871 | 0.03 |
ENSDART00000144887
|
pimr106
|
Pim proto-oncogene, serine/threonine kinase, related 106 |
chr5_-_25084318 | 0.03 |
ENSDART00000089339
|
dph7
|
diphthamide biosynthesis 7 |
chr24_+_42127983 | 0.03 |
ENSDART00000190157
ENSDART00000176032 ENSDART00000175790 |
wwp1
|
WW domain containing E3 ubiquitin protein ligase 1 |
chr16_+_53710416 | 0.03 |
ENSDART00000155929
|
nod1
|
nucleotide-binding oligomerization domain containing 1 |
chr6_+_9677420 | 0.03 |
ENSDART00000064995
|
sumo1
|
small ubiquitin-like modifier 1 |
chr13_-_50546634 | 0.02 |
ENSDART00000192127
|
CU570781.2
|
|
chr2_+_52847049 | 0.02 |
ENSDART00000121980
|
creb3l3b
|
cAMP responsive element binding protein 3-like 3b |
chr8_-_13486258 | 0.02 |
ENSDART00000137459
|
pimr104
|
Pim proto-oncogene, serine/threonine kinase, related 104 |
chr24_+_42117231 | 0.02 |
ENSDART00000067734
|
snx16
|
sorting nexin 16 |
chr3_-_12970418 | 0.02 |
ENSDART00000158747
|
pdgfab
|
platelet-derived growth factor alpha polypeptide b |
chr2_+_21605547 | 0.02 |
ENSDART00000112014
|
mplkip
|
M-phase specific PLK1 interacting protein |
chr2_+_2904080 | 0.02 |
ENSDART00000110416
|
eif2b5
|
eukaryotic translation initiation factor 2B, subunit 5 epsilon |
chr19_+_8606883 | 0.02 |
ENSDART00000054469
ENSDART00000185264 |
s100a10a
|
S100 calcium binding protein A10a |
chr20_+_43925266 | 0.02 |
ENSDART00000037379
|
clic5b
|
chloride intracellular channel 5b |
chr3_+_41917499 | 0.01 |
ENSDART00000028673
|
lfng
|
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
chr2_+_43750899 | 0.01 |
ENSDART00000135836
|
arhgap12a
|
Rho GTPase activating protein 12a |
chr19_-_307246 | 0.01 |
ENSDART00000145916
|
lingo4a
|
leucine rich repeat and Ig domain containing 4a |
chr19_+_7506380 | 0.01 |
ENSDART00000182837
|
prcc
|
papillary renal cell carcinoma (translocation-associated) |
chr21_+_25688388 | 0.01 |
ENSDART00000125709
|
bicdl2
|
bicaudal-D-related protein 2 |
chr4_+_1530287 | 0.01 |
ENSDART00000067446
|
slc38a4
|
solute carrier family 38, member 4 |
chr2_-_5502256 | 0.01 |
ENSDART00000193037
|
saga
|
S-antigen; retina and pineal gland (arrestin) a |
chr18_-_6975175 | 0.01 |
ENSDART00000134194
|
si:dkey-266m15.6
|
si:dkey-266m15.6 |
chr1_-_26544268 | 0.00 |
ENSDART00000152117
|
si:ch211-202n12.2
|
si:ch211-202n12.2 |
chr13_-_13754091 | 0.00 |
ENSDART00000131255
|
ky
|
kyphoscoliosis peptidase |
chr24_+_42149296 | 0.00 |
ENSDART00000154231
|
serpinb1l3
|
serpin peptidase inhibitor, clade B (ovalbumin), member 1, like 3 |
chr15_+_47582207 | 0.00 |
ENSDART00000159388
|
CABZ01087566.1
|
|
chr12_-_14922955 | 0.00 |
ENSDART00000002078
|
neurod2
|
neurogenic differentiation 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.1 | GO:0061687 | detoxification of inorganic compound(GO:0061687) |
0.0 | 0.1 | GO:0035124 | embryonic caudal fin morphogenesis(GO:0035124) |
0.0 | 0.1 | GO:0060612 | adipose tissue development(GO:0060612) |
0.0 | 0.2 | GO:0071425 | hematopoietic stem cell proliferation(GO:0071425) |
0.0 | 0.1 | GO:0010887 | negative regulation of cholesterol storage(GO:0010887) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.3 | GO:0004060 | arylamine N-acetyltransferase activity(GO:0004060) |
0.0 | 0.1 | GO:0016308 | 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308) |
0.0 | 0.3 | GO:0005105 | type 1 fibroblast growth factor receptor binding(GO:0005105) |
0.0 | 0.1 | GO:0047134 | protein-disulfide reductase activity(GO:0047134) |
0.0 | 0.1 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
0.0 | 0.1 | GO:0004340 | glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) glucose binding(GO:0005536) fructokinase activity(GO:0008865) mannokinase activity(GO:0019158) |