PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr2f2 | dr11_v1_chr18_-_23874929_23874929 | 0.42 | 7.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_45128375 Show fit | 2.45 |
ENSDART00000164805
|
calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2 |
|
chr17_-_25737452 Show fit | 2.13 |
ENSDART00000152021
|
si:ch211-214p16.3 |
|
chr24_-_29586082 Show fit | 1.91 |
ENSDART00000136763
|
vav 3 guanine nucleotide exchange factor a |
|
chr17_-_14613711 Show fit | 1.71 |
ENSDART00000157345
|
serine dehydratase-like |
|
chr1_+_25848231 Show fit | 1.65 |
ENSDART00000027973
|
fatty acid binding protein 2, intestinal |
|
chr4_-_16451375 Show fit | 1.61 |
ENSDART00000192700
ENSDART00000128835 |
wu:fc23c09 |
|
chr4_-_5317006 Show fit | 1.53 |
ENSDART00000150867
|
si:ch211-214j24.15 |
|
chr10_-_11385155 Show fit | 1.50 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr7_-_26457208 Show fit | 1.44 |
ENSDART00000173519
|
zgc:172079 |
|
chr12_+_22607761 Show fit | 1.41 |
ENSDART00000153112
|
si:dkey-219e21.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.7 | GO:0042738 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.1 | 2.6 | GO:0035118 | embryonic pectoral fin morphogenesis(GO:0035118) |
0.4 | 1.7 | GO:0006549 | isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097) |
0.0 | 1.5 | GO:1901385 | regulation of voltage-gated calcium channel activity(GO:1901385) |
0.1 | 1.4 | GO:1901642 | nucleoside transport(GO:0015858) nucleoside transmembrane transport(GO:1901642) |
0.3 | 1.3 | GO:2000275 | regulation of oxidative phosphorylation uncoupler activity(GO:2000275) |
0.0 | 1.3 | GO:0043149 | contractile actin filament bundle assembly(GO:0030038) stress fiber assembly(GO:0043149) |
0.1 | 1.2 | GO:0006797 | polyphosphate metabolic process(GO:0006797) polyphosphate catabolic process(GO:0006798) |
0.0 | 1.2 | GO:0051923 | sulfation(GO:0051923) |
0.0 | 1.2 | GO:0072348 | sulfur compound transport(GO:0072348) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.3 | 1.3 | GO:0030314 | junctional membrane complex(GO:0030314) |
0.0 | 0.9 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.2 | 0.7 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.0 | 0.7 | GO:0031932 | TORC2 complex(GO:0031932) |
0.0 | 0.7 | GO:0016605 | PML body(GO:0016605) |
0.0 | 0.7 | GO:0032432 | actin filament bundle(GO:0032432) |
0.2 | 0.6 | GO:0035327 | transcriptionally active chromatin(GO:0035327) |
0.0 | 0.6 | GO:0002116 | semaphorin receptor complex(GO:0002116) |
0.0 | 0.6 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.5 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 2.6 | GO:0015370 | solute:sodium symporter activity(GO:0015370) |
0.2 | 2.4 | GO:0005504 | fatty acid binding(GO:0005504) |
0.0 | 2.1 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.2 | 2.0 | GO:0008422 | beta-glucosidase activity(GO:0008422) |
0.0 | 2.0 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.3 | 1.7 | GO:0016841 | ammonia-lyase activity(GO:0016841) |
0.0 | 1.5 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.1 | 1.3 | GO:0001965 | G-protein alpha-subunit binding(GO:0001965) |
0.1 | 1.2 | GO:0004046 | aminoacylase activity(GO:0004046) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.9 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 0.8 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 0.7 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
0.0 | 0.7 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.7 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.0 | 0.6 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.6 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.6 | PID EPHRINB REV PATHWAY | Ephrin B reverse signaling |
0.0 | 0.5 | PID FGF PATHWAY | FGF signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.7 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |
0.1 | 1.4 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.1 | 1.3 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.0 | 1.2 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.1 | 1.1 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.0 | 1.0 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 0.8 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 0.7 | REACTOME RAF MAP KINASE CASCADE | Genes involved in RAF/MAP kinase cascade |
0.0 | 0.7 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.0 | 0.7 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |