PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr4a1 | dr11_v1_chr23_-_32156278_32156278 | 0.57 | 1.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_11385155 Show fit | 5.45 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr5_+_1278092 Show fit | 5.20 |
ENSDART00000147972
ENSDART00000159783 |
dynamin 1a |
|
chr19_-_703898 Show fit | 3.44 |
ENSDART00000181096
ENSDART00000121462 |
solute carrier family 6 (neutral amino acid transporter), member 19a, tandem duplicate 2 |
|
chr23_-_45504991 Show fit | 2.98 |
ENSDART00000148761
|
collagen type XXIV alpha 1 |
|
chr5_+_45677781 Show fit | 2.97 |
ENSDART00000163120
ENSDART00000126537 |
group-specific component (vitamin D binding protein) |
|
chr1_-_50838160 Show fit | 2.79 |
ENSDART00000163939
ENSDART00000165111 |
zgc:154142 |
|
chr15_-_12270857 Show fit | 2.76 |
ENSDART00000170093
|
si:dkey-36i7.3 |
|
chr25_+_29160102 Show fit | 2.68 |
ENSDART00000162854
|
pyruvate kinase M1/2b |
|
chr8_-_14052349 Show fit | 2.10 |
ENSDART00000135811
|
ATPase plasma membrane Ca2+ transporting 3a |
|
chr20_-_14206698 Show fit | 1.98 |
ENSDART00000082441
|
discs, large (Drosophila) homolog-associated protein 2b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.9 | GO:0098884 | postsynaptic neurotransmitter receptor internalization(GO:0098884) |
0.1 | 4.7 | GO:0032869 | cellular response to insulin stimulus(GO:0032869) |
0.0 | 4.0 | GO:0043547 | positive regulation of GTPase activity(GO:0043547) |
0.5 | 3.3 | GO:0038063 | collagen-activated tyrosine kinase receptor signaling pathway(GO:0038063) collagen-activated signaling pathway(GO:0038065) |
0.1 | 3.0 | GO:0051180 | vitamin transport(GO:0051180) |
0.0 | 3.0 | GO:0035725 | sodium ion transmembrane transport(GO:0035725) |
0.3 | 2.8 | GO:0097090 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
0.0 | 2.1 | GO:0005977 | glycogen metabolic process(GO:0005977) cellular glucan metabolic process(GO:0006073) glucan metabolic process(GO:0044042) |
0.4 | 2.0 | GO:0016191 | synaptic vesicle uncoating(GO:0016191) |
0.1 | 2.0 | GO:0098962 | regulation of postsynaptic neurotransmitter receptor activity(GO:0098962) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.9 | GO:0098844 | postsynaptic endocytic zone membrane(GO:0098844) |
1.0 | 3.0 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.0 | 3.0 | GO:0014069 | postsynaptic density(GO:0014069) |
0.2 | 2.1 | GO:0005964 | phosphorylase kinase complex(GO:0005964) |
0.0 | 2.0 | GO:0098978 | glutamatergic synapse(GO:0098978) |
0.1 | 1.8 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.1 | 1.7 | GO:0033162 | melanosome membrane(GO:0033162) chitosome(GO:0045009) |
0.1 | 1.6 | GO:0032420 | stereocilium(GO:0032420) |
0.0 | 1.6 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.1 | 1.5 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.7 | GO:0008017 | microtubule binding(GO:0008017) |
0.0 | 3.3 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 3.3 | GO:0015293 | symporter activity(GO:0015293) |
0.1 | 3.1 | GO:0042043 | neurexin family protein binding(GO:0042043) |
1.0 | 3.0 | GO:0005499 | vitamin D binding(GO:0005499) |
0.0 | 2.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.4 | 2.7 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.1 | 2.1 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.0 | 2.1 | GO:0005516 | calmodulin binding(GO:0005516) |
0.0 | 2.0 | GO:0030276 | clathrin binding(GO:0030276) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.2 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 3.0 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.0 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 1.0 | PID P73PATHWAY | p73 transcription factor network |
0.0 | 0.8 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
0.0 | 0.8 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 0.6 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.6 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.0 | 0.5 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 0.4 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.6 | REACTOME STEROID HORMONES | Genes involved in Steroid hormones |
0.4 | 3.1 | REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT | Genes involved in Organic cation/anion/zwitterion transport |
0.1 | 3.0 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 2.2 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.1 | 2.0 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.1 | 1.6 | REACTOME PROSTACYCLIN SIGNALLING THROUGH PROSTACYCLIN RECEPTOR | Genes involved in Prostacyclin signalling through prostacyclin receptor |
0.0 | 1.6 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.0 | 1.1 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.1 | 1.0 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.1 | 0.9 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |