PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr4a2a | dr11_v1_chr9_-_5045378_5045378 | -0.55 | 1.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_16451375 Show fit | 6.26 |
ENSDART00000192700
ENSDART00000128835 |
wu:fc23c09 |
|
chr20_-_29499363 Show fit | 5.63 |
ENSDART00000152889
ENSDART00000153252 ENSDART00000170972 ENSDART00000166420 ENSDART00000163079 |
ribonucleotide reductase M2 polypeptide |
|
chr10_+_22775253 Show fit | 4.98 |
ENSDART00000190141
|
transmembrane protein 88 a |
|
chr19_-_47571456 Show fit | 4.76 |
ENSDART00000158071
ENSDART00000165841 |
ribonucleotide reductase M2 polypeptide |
|
chr23_-_21471022 Show fit | 4.47 |
ENSDART00000104206
|
hairy-related 4, tandem duplicate 2 |
|
chr2_-_34138400 Show fit | 4.44 |
ENSDART00000056667
|
centromere protein L |
|
chr17_+_17764979 Show fit | 4.38 |
ENSDART00000105013
|
alkB homolog 1, histone H2A dioxygenase |
|
chr5_-_14509137 Show fit | 4.21 |
ENSDART00000180742
|
si:ch211-244o22.2 |
|
chr13_+_33651416 Show fit | 3.61 |
ENSDART00000180221
|
|
|
chr17_-_51224159 Show fit | 3.24 |
ENSDART00000185749
|
presenilin 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 13.0 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
1.7 | 5.0 | GO:0060923 | negative regulation of striated muscle cell differentiation(GO:0051154) negative regulation of cardiac muscle tissue development(GO:0055026) cardiac muscle cell fate commitment(GO:0060923) canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment(GO:0061317) regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment(GO:1901295) negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment(GO:1901296) negative regulation of cardiocyte differentiation(GO:1905208) negative regulation of cardiac muscle cell differentiation(GO:2000726) |
0.7 | 4.7 | GO:0061298 | retina vasculature development in camera-type eye(GO:0061298) |
0.9 | 4.4 | GO:0035513 | oxidative RNA demethylation(GO:0035513) |
0.4 | 4.2 | GO:0035307 | positive regulation of dephosphorylation(GO:0035306) positive regulation of protein dephosphorylation(GO:0035307) |
0.1 | 4.1 | GO:0006414 | translational elongation(GO:0006414) |
0.0 | 3.7 | GO:0090630 | activation of GTPase activity(GO:0090630) |
0.2 | 3.5 | GO:0019367 | fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626) |
0.2 | 3.5 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.0 | 3.3 | GO:0090090 | negative regulation of canonical Wnt signaling pathway(GO:0090090) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.1 | GO:0005667 | transcription factor complex(GO:0005667) |
0.0 | 5.3 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 4.4 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
0.0 | 3.5 | GO:0005814 | centriole(GO:0005814) |
0.0 | 3.5 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.0 | 3.4 | GO:0016607 | nuclear speck(GO:0016607) |
0.6 | 3.2 | GO:0043198 | dendritic shaft(GO:0043198) |
0.2 | 2.7 | GO:0005742 | mitochondrial outer membrane translocase complex(GO:0005742) |
0.3 | 2.5 | GO:0072487 | MSL complex(GO:0072487) |
0.0 | 2.3 | GO:0005840 | ribosome(GO:0005840) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.7 | GO:0046983 | protein dimerization activity(GO:0046983) |
1.5 | 10.4 | GO:0061731 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.1 | 6.1 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.0 | 4.9 | GO:0003682 | chromatin binding(GO:0003682) |
1.1 | 4.4 | GO:0035516 | oxidative DNA demethylase activity(GO:0035516) |
0.3 | 4.1 | GO:0015272 | ATP-activated inward rectifier potassium channel activity(GO:0015272) |
0.1 | 4.1 | GO:0070491 | repressing transcription factor binding(GO:0070491) |
0.2 | 3.5 | GO:0102337 | fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
0.4 | 3.2 | GO:0042500 | aspartic endopeptidase activity, intramembrane cleaving(GO:0042500) |
0.1 | 2.9 | GO:0004698 | protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.9 | PID E2F PATHWAY | E2F transcription factor network |
0.2 | 3.2 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.1 | 3.2 | PID ATM PATHWAY | ATM pathway |
0.1 | 2.6 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 2.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
0.0 | 2.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 1.9 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
0.1 | 1.6 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 1.5 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 1.3 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 10.4 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 4.5 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.1 | 4.4 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.3 | 3.2 | REACTOME SIGNALING BY NOTCH4 | Genes involved in Signaling by NOTCH4 |
0.1 | 2.6 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.3 | 2.2 | REACTOME GLYCOPROTEIN HORMONES | Genes involved in Glycoprotein hormones |
0.2 | 1.9 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.1 | 1.9 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.2 | 1.8 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.2 | 1.7 | REACTOME ACYL CHAIN REMODELLING OF PE | Genes involved in Acyl chain remodelling of PE |