PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr4a2b | dr11_v1_chr6_+_12462079_12462079 | 0.64 | 3.0e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_11385155 Show fit | 3.88 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr1_+_19332837 Show fit | 3.09 |
ENSDART00000078594
|
tyrosinase-related protein 1b |
|
chr5_+_1278092 Show fit | 3.00 |
ENSDART00000147972
ENSDART00000159783 |
dynamin 1a |
|
chr17_-_12389259 Show fit | 2.95 |
ENSDART00000185724
|
synaptosomal-associated protein, 25b |
|
chr6_-_31348999 Show fit | 2.55 |
ENSDART00000153734
|
DnaJ (Hsp40) homolog, subfamily C, member 6 |
|
chr5_-_41831646 Show fit | 2.49 |
ENSDART00000134326
|
si:dkey-65b12.6 |
|
chr23_+_27068225 Show fit | 2.41 |
ENSDART00000054238
|
major intrinsic protein of lens fiber a |
|
chr20_+_106481 Show fit | 2.29 |
ENSDART00000148834
|
si:ch1073-155h21.2 |
|
chr25_-_16969922 Show fit | 2.19 |
ENSDART00000111158
|
tp53-induced glycolysis and apoptosis regulator a |
|
chr8_-_14052349 Show fit | 2.15 |
ENSDART00000135811
|
ATPase plasma membrane Ca2+ transporting 3a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.1 | GO:0097066 | response to thyroid hormone(GO:0097066) |
0.2 | 3.0 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.5 | 2.6 | GO:0016191 | synaptic vesicle uncoating(GO:0016191) |
0.3 | 2.4 | GO:0006833 | water transport(GO:0006833) |
0.0 | 2.3 | GO:0051480 | regulation of cytosolic calcium ion concentration(GO:0051480) |
0.7 | 2.2 | GO:0043455 | regulation of secondary metabolic process(GO:0043455) |
0.4 | 2.2 | GO:0038065 | collagen-activated tyrosine kinase receptor signaling pathway(GO:0038063) collagen-activated signaling pathway(GO:0038065) |
0.1 | 2.1 | GO:0033627 | cell adhesion mediated by integrin(GO:0033627) |
0.5 | 2.0 | GO:0007217 | tachykinin receptor signaling pathway(GO:0007217) |
0.2 | 2.0 | GO:0019430 | response to superoxide(GO:0000303) response to oxygen radical(GO:0000305) removal of superoxide radicals(GO:0019430) cellular response to oxygen radical(GO:0071450) cellular response to superoxide(GO:0071451) cellular oxidant detoxification(GO:0098869) cellular detoxification(GO:1990748) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.2 | GO:0031012 | extracellular matrix(GO:0031012) |
0.3 | 3.1 | GO:0033162 | melanosome membrane(GO:0033162) chitosome(GO:0045009) |
0.5 | 3.0 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.0 | 2.2 | GO:0014069 | postsynaptic density(GO:0014069) |
0.0 | 2.1 | GO:0008305 | integrin complex(GO:0008305) |
0.1 | 2.0 | GO:0098844 | postsynaptic endocytic zone membrane(GO:0098844) |
0.0 | 1.8 | GO:0043025 | neuronal cell body(GO:0043025) |
0.2 | 1.7 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
0.0 | 1.7 | GO:0030964 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.5 | 1.6 | GO:0005592 | collagen type XI trimer(GO:0005592) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.3 | 2.4 | GO:0015250 | water channel activity(GO:0015250) |
0.5 | 2.2 | GO:0034416 | bisphosphoglycerate phosphatase activity(GO:0034416) |
0.1 | 2.1 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.0 | 2.1 | GO:0005178 | integrin binding(GO:0005178) |
0.0 | 2.1 | GO:0015293 | symporter activity(GO:0015293) |
0.3 | 2.0 | GO:0004784 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
0.0 | 1.8 | GO:0030276 | clathrin binding(GO:0030276) |
0.2 | 1.7 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
0.1 | 1.6 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.0 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 1.6 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.2 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.0 | 0.8 | PID IL2 1PATHWAY | IL2-mediated signaling events |
0.0 | 0.6 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.0 | 0.1 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.6 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.0 | 2.0 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.0 | 1.6 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 1.6 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 1.0 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.0 | 1.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.0 | 0.9 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.0 | 0.8 | REACTOME GROWTH HORMONE RECEPTOR SIGNALING | Genes involved in Growth hormone receptor signaling |
0.1 | 0.7 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 0.7 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |