PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr4a3 | dr11_v1_chr16_+_27345383_27345383 | -0.76 | 1.5e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_16451375 Show fit | 3.77 |
ENSDART00000192700
ENSDART00000128835 |
wu:fc23c09 |
|
chr16_-_45910050 Show fit | 2.71 |
ENSDART00000133213
|
antifreeze protein type IV |
|
chr22_+_14102397 Show fit | 2.12 |
ENSDART00000146397
ENSDART00000137530 |
hatching enzyme 1, tandem duplicate 3 |
|
chr13_-_37127970 Show fit | 1.96 |
ENSDART00000135510
|
spectrin repeat containing, nuclear envelope 2b |
|
chr23_+_32335871 Show fit | 1.91 |
ENSDART00000149698
|
solute carrier family 39 (zinc transporter), member 5 |
|
chr8_-_40183197 Show fit | 1.79 |
ENSDART00000005118
|
glutathione peroxidase 8 (putative) |
|
chr23_+_42396934 Show fit | 1.73 |
ENSDART00000169821
|
cytochrome P450, family 2, subfamily AA, polypeptide 8 |
|
chr19_-_35439237 Show fit | 1.69 |
ENSDART00000145883
|
anillin, actin binding protein |
|
chr5_-_14509137 Show fit | 1.53 |
ENSDART00000180742
|
si:ch211-244o22.2 |
|
chr4_+_15942075 Show fit | 1.40 |
ENSDART00000147964
|
si:dkey-117n7.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.4 | GO:0006979 | response to oxidative stress(GO:0006979) |
0.1 | 2.4 | GO:0060030 | dorsal convergence(GO:0060030) |
0.4 | 2.2 | GO:0009219 | pyrimidine deoxyribonucleotide metabolic process(GO:0009219) |
0.4 | 2.1 | GO:0003261 | cardiac muscle progenitor cell migration to the midline involved in heart field formation(GO:0003261) |
0.2 | 1.9 | GO:0071578 | zinc II ion transmembrane import(GO:0071578) |
0.4 | 1.7 | GO:0008356 | asymmetric cell division(GO:0008356) |
0.0 | 1.6 | GO:0030917 | midbrain-hindbrain boundary development(GO:0030917) |
0.1 | 1.5 | GO:0035306 | positive regulation of dephosphorylation(GO:0035306) positive regulation of protein dephosphorylation(GO:0035307) |
0.5 | 1.4 | GO:0071918 | urea transmembrane transport(GO:0071918) |
0.0 | 1.2 | GO:1902593 | protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744) single-organism nuclear import(GO:1902593) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.7 | GO:0005826 | actomyosin contractile ring(GO:0005826) |
0.1 | 1.2 | GO:0033202 | Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202) |
0.0 | 1.2 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.0 | 0.9 | GO:0071339 | MLL1/2 complex(GO:0044665) MLL1 complex(GO:0071339) |
0.1 | 0.8 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
0.0 | 0.8 | GO:0032039 | integrator complex(GO:0032039) |
0.0 | 0.8 | GO:0005657 | replication fork(GO:0005657) |
0.0 | 0.8 | GO:0015934 | large ribosomal subunit(GO:0015934) |
0.1 | 0.6 | GO:0032299 | ribonuclease H2 complex(GO:0032299) |
0.1 | 0.6 | GO:0000439 | core TFIIH complex(GO:0000439) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.1 | GO:0005161 | platelet-derived growth factor receptor binding(GO:0005161) |
0.0 | 2.1 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.1 | 1.9 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.0 | 1.9 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.1 | 1.8 | GO:0004602 | glutathione peroxidase activity(GO:0004602) |
0.3 | 1.7 | GO:0047066 | phospholipid-hydroperoxide glutathione peroxidase activity(GO:0047066) |
0.1 | 1.4 | GO:0015204 | urea transmembrane transporter activity(GO:0015204) |
0.3 | 1.2 | GO:0050211 | procollagen galactosyltransferase activity(GO:0050211) |
0.1 | 1.2 | GO:0061608 | nuclear import signal receptor activity(GO:0061608) |
0.0 | 1.2 | GO:0050840 | extracellular matrix binding(GO:0050840) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 1.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 1.1 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.0 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 0.9 | ST STAT3 PATHWAY | STAT3 Pathway |
0.0 | 0.3 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 0.1 | ST PAC1 RECEPTOR PATHWAY | PAC1 Receptor Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.1 | 1.3 | REACTOME KINESINS | Genes involved in Kinesins |
0.1 | 1.2 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.0 | 1.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 0.9 | REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS | Genes involved in Signal regulatory protein (SIRP) family interactions |
0.1 | 0.8 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.0 | 0.8 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.0 | 0.6 | REACTOME RNA POL I TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase I Transcription Termination |
0.0 | 0.4 | REACTOME ACYL CHAIN REMODELLING OF PE | Genes involved in Acyl chain remodelling of PE |
0.0 | 0.4 | REACTOME AMINE COMPOUND SLC TRANSPORTERS | Genes involved in Amine compound SLC transporters |