PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr6a1a | dr11_v1_chr8_-_53044300_53044300 | -0.62 | 4.2e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22188117 Show fit | 9.29 |
ENSDART00000132890
|
crystallin, gamma M2d17 |
|
chr19_-_5135345 Show fit | 8.91 |
ENSDART00000151787
|
guanine nucleotide binding protein (G protein), beta polypeptide 3b |
|
chr10_-_11383900 Show fit | 8.14 |
ENSDART00000101045
|
placenta-specific 8, tandem duplicate 1 |
|
chr2_-_37210397 Show fit | 6.55 |
ENSDART00000084938
|
apolipoprotein Da, duplicate 1 |
|
chr3_+_39540014 Show fit | 6.20 |
ENSDART00000074848
|
zgc:165423 |
|
chr3_+_13469704 Show fit | 6.05 |
ENSDART00000166806
|
zgc:77748 |
|
chr5_-_50992690 Show fit | 4.54 |
ENSDART00000149553
ENSDART00000097460 ENSDART00000192021 |
3-hydroxy-3-methylglutaryl-CoA reductase a |
|
chr9_-_44939104 Show fit | 4.44 |
ENSDART00000192903
|
villin 1 |
|
chr14_+_32838110 Show fit | 4.26 |
ENSDART00000158077
|
arrestin 3b, retinal (X-arrestin) |
|
chr12_+_34896956 Show fit | 4.10 |
ENSDART00000055415
|
peripherin 2a (retinal degeneration, slow) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 14.9 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
0.0 | 14.0 | GO:0007186 | G-protein coupled receptor signaling pathway(GO:0007186) |
0.1 | 9.3 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.6 | 7.2 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.2 | 6.5 | GO:0007568 | aging(GO:0007568) |
1.0 | 6.2 | GO:0032367 | intracellular cholesterol transport(GO:0032367) |
0.3 | 5.9 | GO:0046688 | response to copper ion(GO:0046688) |
0.3 | 5.1 | GO:0042574 | retinal metabolic process(GO:0042574) |
1.1 | 4.4 | GO:2000392 | lamellipodium morphogenesis(GO:0072673) regulation of lamellipodium morphogenesis(GO:2000392) |
0.1 | 3.8 | GO:0051592 | response to calcium ion(GO:0051592) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 12.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.1 | 8.9 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.2 | 7.4 | GO:0031970 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.1 | 4.6 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.1 | 4.5 | GO:0005778 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.9 | 4.4 | GO:0032433 | filopodium tip(GO:0032433) |
0.0 | 4.2 | GO:0005765 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.1 | 3.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 3.4 | GO:0043235 | receptor complex(GO:0043235) |
0.1 | 3.0 | GO:0016605 | PML body(GO:0016605) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.3 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.6 | 8.9 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
0.0 | 7.2 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.0 | 6.9 | GO:0008236 | serine-type peptidase activity(GO:0008236) serine hydrolase activity(GO:0017171) |
0.8 | 5.7 | GO:0004459 | L-lactate dehydrogenase activity(GO:0004459) |
0.1 | 5.4 | GO:0015485 | cholesterol binding(GO:0015485) |
0.0 | 4.8 | GO:0051015 | actin filament binding(GO:0051015) |
0.1 | 4.4 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.0 | 4.4 | GO:0015293 | symporter activity(GO:0015293) |
0.1 | 4.2 | GO:0050661 | NADP binding(GO:0050661) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.4 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.1 | 3.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 3.0 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.1 | 2.5 | PID FOXO PATHWAY | FoxO family signaling |
0.0 | 2.5 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.1 | 2.1 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.0 | 2.0 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.0 | 1.9 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
0.2 | 1.7 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.0 | 1.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.0 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.2 | 4.8 | REACTOME STEROID HORMONES | Genes involved in Steroid hormones |
0.1 | 4.3 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.1 | 3.4 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.4 | 3.1 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.5 | 2.5 | REACTOME PURINE CATABOLISM | Genes involved in Purine catabolism |
0.3 | 2.4 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.1 | 2.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 2.2 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.1 | 2.0 | REACTOME FATTY ACYL COA BIOSYNTHESIS | Genes involved in Fatty Acyl-CoA Biosynthesis |