PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr6a1b | dr11_v1_chr21_+_8239544_8239544 | -0.79 | 5.1e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_-_5135345 Show fit | 9.25 |
ENSDART00000151787
|
guanine nucleotide binding protein (G protein), beta polypeptide 3b |
|
chr5_-_50992690 Show fit | 7.11 |
ENSDART00000149553
ENSDART00000097460 ENSDART00000192021 |
3-hydroxy-3-methylglutaryl-CoA reductase a |
|
chr3_+_13469704 Show fit | 6.31 |
ENSDART00000166806
|
zgc:77748 |
|
chr21_+_11401247 Show fit | 5.30 |
ENSDART00000143952
|
carboxyl ester lipase, tandem duplicate 1 |
|
chr3_+_39540014 Show fit | 4.89 |
ENSDART00000074848
|
zgc:165423 |
|
chr20_+_9128829 Show fit | 4.64 |
ENSDART00000064144
ENSDART00000137450 |
bisphosphate nucleotidase 1 |
|
chr2_-_37210397 Show fit | 4.56 |
ENSDART00000084938
|
apolipoprotein Da, duplicate 1 |
|
chr25_+_14092871 Show fit | 4.54 |
ENSDART00000067239
|
guanylate cyclase activator 1g |
|
chr3_+_19299309 Show fit | 3.91 |
ENSDART00000046297
ENSDART00000146955 |
low density lipoprotein receptor a |
|
chr15_+_19682013 Show fit | 3.65 |
ENSDART00000127368
|
si:dkey-4p15.5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.8 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
0.3 | 6.3 | GO:0015936 | coenzyme A metabolic process(GO:0015936) |
0.5 | 5.3 | GO:0097104 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
0.2 | 4.6 | GO:0071545 | phosphorylated carbohydrate dephosphorylation(GO:0046838) inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545) |
0.1 | 4.6 | GO:0007568 | aging(GO:0007568) |
0.7 | 3.9 | GO:0032367 | intracellular cholesterol transport(GO:0032367) |
0.4 | 3.8 | GO:0055129 | proline biosynthetic process(GO:0006561) L-proline biosynthetic process(GO:0055129) |
0.2 | 3.4 | GO:0046688 | response to copper ion(GO:0046688) |
0.1 | 3.4 | GO:0046839 | phospholipid dephosphorylation(GO:0046839) |
0.2 | 3.2 | GO:0031952 | regulation of protein autophosphorylation(GO:0031952) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.3 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.2 | 7.6 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.0 | 6.8 | GO:0009986 | cell surface(GO:0009986) |
0.0 | 3.4 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 3.2 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.2 | 2.6 | GO:0071564 | npBAF complex(GO:0071564) |
0.1 | 2.6 | GO:0031970 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.0 | 2.2 | GO:0031902 | late endosome membrane(GO:0031902) |
0.0 | 2.2 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
0.0 | 1.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 9.2 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
0.1 | 7.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.9 | 7.5 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.1 | 7.1 | GO:0050661 | NADP binding(GO:0050661) |
1.8 | 5.3 | GO:0004771 | sterol esterase activity(GO:0004771) |
0.0 | 4.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.2 | 4.6 | GO:0008252 | nucleotidase activity(GO:0008252) |
1.0 | 3.9 | GO:0030228 | lipoprotein particle receptor activity(GO:0030228) |
0.1 | 3.9 | GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706) |
0.4 | 3.4 | GO:0004096 | catalase activity(GO:0004096) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.2 | PID FOXO PATHWAY | FoxO family signaling |
0.2 | 4.6 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.1 | 3.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.2 | 3.2 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.1 | 3.1 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.2 | 3.0 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.2 | 2.1 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.0 | 1.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 0.7 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 4.6 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.7 | 3.4 | REACTOME PURINE CATABOLISM | Genes involved in Purine catabolism |
0.0 | 3.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.3 | 3.2 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.2 | 3.1 | REACTOME FATTY ACYL COA BIOSYNTHESIS | Genes involved in Fatty Acyl-CoA Biosynthesis |
0.1 | 2.6 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 2.6 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.3 | 2.2 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.1 | 2.1 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.2 | 1.8 | REACTOME NOTCH HLH TRANSCRIPTION PATHWAY | Genes involved in Notch-HLH transcription pathway |