PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
onecutl | dr11_v1_chr16_-_29528198_29528198 | -0.54 | 1.7e-02 | Click! |
onecut1 | dr11_v1_chr18_+_38755023_38755024 | 0.03 | 9.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_61205711 Show fit | 12.17 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr6_-_609880 Show fit | 7.81 |
ENSDART00000149248
ENSDART00000148867 ENSDART00000149414 ENSDART00000148552 ENSDART00000148391 |
lectin, galactoside-binding, soluble, 2b |
|
chr2_-_51794472 Show fit | 7.31 |
ENSDART00000186652
|
|
|
chr2_+_35240485 Show fit | 7.22 |
ENSDART00000179804
|
tenascin R (restrictin, janusin) |
|
chr12_-_22524388 Show fit | 7.18 |
ENSDART00000020942
|
sex hormone-binding globulin |
|
chr15_-_12270857 Show fit | 7.09 |
ENSDART00000170093
|
si:dkey-36i7.3 |
|
chr15_-_37846047 Show fit | 6.60 |
ENSDART00000184837
|
heat shock cognate 70 |
|
chr5_+_55626693 Show fit | 5.93 |
ENSDART00000168908
ENSDART00000161412 |
neurotrophic tyrosine kinase, receptor, type 2b |
|
chr8_-_4327473 Show fit | 5.80 |
ENSDART00000134378
|
cut-like homeobox 2b |
|
chr8_-_40555340 Show fit | 5.79 |
ENSDART00000163348
|
NPC1 like intracellular cholesterol transporter 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 15.9 | GO:0007411 | axon guidance(GO:0007411) |
0.1 | 12.4 | GO:0002040 | sprouting angiogenesis(GO:0002040) |
0.1 | 8.8 | GO:0006475 | internal protein amino acid acetylation(GO:0006475) internal peptidyl-lysine acetylation(GO:0018393) |
0.6 | 8.0 | GO:0010996 | response to auditory stimulus(GO:0010996) |
0.1 | 7.3 | GO:0090630 | activation of GTPase activity(GO:0090630) |
0.1 | 6.7 | GO:0042737 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.4 | 6.5 | GO:0098943 | neurotransmitter receptor transport, postsynaptic endosome to lysosome(GO:0098943) |
0.1 | 6.5 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
2.0 | 5.9 | GO:0099540 | synaptic signaling via neuropeptide(GO:0099538) trans-synaptic signaling by neuropeptide(GO:0099540) trans-synaptic signaling by neuropeptide, modulating synaptic transmission(GO:0099551) cellular response to brain-derived neurotrophic factor stimulus(GO:1990416) |
0.1 | 5.9 | GO:0008045 | motor neuron axon guidance(GO:0008045) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 18.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.3 | 13.7 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.0 | 9.5 | GO:0030424 | axon(GO:0030424) |
0.1 | 8.5 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 7.6 | GO:0043005 | neuron projection(GO:0043005) |
0.7 | 7.0 | GO:0042583 | chromaffin granule(GO:0042583) |
0.2 | 6.5 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 6.5 | GO:0005905 | clathrin-coated pit(GO:0005905) |
0.0 | 6.3 | GO:0045211 | postsynaptic membrane(GO:0045211) |
1.0 | 5.8 | GO:0005955 | calcineurin complex(GO:0005955) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 12.0 | GO:0051787 | misfolded protein binding(GO:0051787) |
0.0 | 8.3 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.5 | 8.0 | GO:0015269 | calcium-activated potassium channel activity(GO:0015269) |
0.8 | 7.8 | GO:0016936 | galactoside binding(GO:0016936) |
0.5 | 7.1 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.1 | 7.0 | GO:0042562 | hormone binding(GO:0042562) |
0.1 | 6.7 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.1 | 6.5 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.1 | 6.5 | GO:0061733 | peptide-lysine-N-acetyltransferase activity(GO:0061733) |
0.2 | 6.2 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 12.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.2 | 7.2 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
0.1 | 7.0 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.2 | 6.5 | ST P38 MAPK PATHWAY | p38 MAPK Pathway |
0.0 | 6.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.4 | 5.8 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 4.8 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.2 | 4.7 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.1 | 2.6 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 2.4 | PID P53 REGULATION PATHWAY | p53 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 7.2 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 7.0 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.3 | 5.8 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.1 | 5.6 | REACTOME TRANSPORT TO THE GOLGI AND SUBSEQUENT MODIFICATION | Genes involved in Transport to the Golgi and subsequent modification |
0.5 | 4.7 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.2 | 3.6 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.2 | 3.4 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 3.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.2 | 3.0 | REACTOME BOTULINUM NEUROTOXICITY | Genes involved in Botulinum neurotoxicity |
0.1 | 2.9 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |