PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
onecut2 | dr11_v1_chr21_-_1742159_1742159 | 0.52 | 2.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_15266093 Show fit | 2.77 |
ENSDART00000124676
|
synaptic vesicle glycoprotein 2Ba |
|
chr11_-_11518469 Show fit | 2.36 |
ENSDART00000104254
|
keratin 15 |
|
chr12_-_22524388 Show fit | 2.26 |
ENSDART00000020942
|
sex hormone-binding globulin |
|
chr3_-_28120092 Show fit | 2.20 |
ENSDART00000151143
|
RNA binding fox-1 homolog 1 |
|
chr17_-_25737452 Show fit | 2.15 |
ENSDART00000152021
|
si:ch211-214p16.3 |
|
chr8_-_23081511 Show fit | 2.10 |
ENSDART00000142015
ENSDART00000135764 ENSDART00000147021 |
si:dkey-70p6.1 |
|
chr5_-_29643930 Show fit | 2.08 |
ENSDART00000161250
|
glutamate receptor, ionotropic, N-methyl D-aspartate 1b |
|
chr25_+_7229046 Show fit | 1.93 |
ENSDART00000149965
ENSDART00000041820 |
leucine rich repeat and Ig domain containing 1a |
|
chr2_-_32505091 Show fit | 1.92 |
ENSDART00000141884
ENSDART00000056639 |
Fas apoptotic inhibitory molecule 2a |
|
chr6_+_3828560 Show fit | 1.87 |
ENSDART00000185273
ENSDART00000179091 |
glutamate decarboxylase 1b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.4 | GO:0043507 | activation of JUN kinase activity(GO:0007257) positive regulation of JUN kinase activity(GO:0043507) |
0.0 | 2.2 | GO:0021854 | hypothalamus development(GO:0021854) |
0.1 | 2.1 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
0.2 | 2.0 | GO:0032024 | positive regulation of insulin secretion(GO:0032024) |
0.1 | 2.0 | GO:0050853 | B cell receptor signaling pathway(GO:0050853) |
0.6 | 1.9 | GO:0009449 | gamma-aminobutyric acid biosynthetic process(GO:0009449) |
0.0 | 1.9 | GO:0031103 | axon regeneration(GO:0031103) |
0.1 | 1.8 | GO:0048899 | anterior lateral line development(GO:0048899) |
0.1 | 1.4 | GO:0050728 | negative regulation of inflammatory response(GO:0050728) |
0.1 | 1.3 | GO:0038007 | netrin-activated signaling pathway(GO:0038007) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.8 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.0 | 2.4 | GO:0005882 | intermediate filament(GO:0005882) |
0.1 | 2.1 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.0 | 2.1 | GO:0045121 | membrane raft(GO:0045121) membrane microdomain(GO:0098857) |
0.0 | 2.0 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.0 | 1.8 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.4 | 1.2 | GO:0044316 | cone cell pedicle(GO:0044316) |
0.0 | 1.2 | GO:0035869 | ciliary transition zone(GO:0035869) |
0.0 | 0.7 | GO:0005640 | nuclear outer membrane(GO:0005640) |
0.0 | 0.7 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.8 | GO:0042562 | hormone binding(GO:0042562) |
0.3 | 2.4 | GO:0004706 | JUN kinase kinase kinase activity(GO:0004706) |
0.1 | 2.1 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
0.6 | 1.9 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
0.1 | 1.9 | GO:0005154 | epidermal growth factor receptor binding(GO:0005154) |
0.1 | 1.8 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.2 | 1.4 | GO:0032052 | bile acid binding(GO:0032052) |
0.1 | 1.3 | GO:0005042 | netrin receptor activity(GO:0005042) |
0.1 | 1.2 | GO:0015269 | calcium-activated potassium channel activity(GO:0015269) |
0.0 | 1.2 | GO:0001085 | RNA polymerase II transcription factor binding(GO:0001085) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.4 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.1 | 2.3 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
0.1 | 1.8 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 1.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 1.6 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.0 | 0.5 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 0.2 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.1 | 1.6 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.1 | 1.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 1.1 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 0.7 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.0 | 0.7 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 0.5 | REACTOME RAP1 SIGNALLING | Genes involved in Rap1 signalling |
0.0 | 0.5 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 0.4 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.1 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |