PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
onecut3a | dr11_v1_chr22_+_20461488_20461488 | 0.73 | 4.4e-04 | Click! |
onecut3b | dr11_v1_chr2_+_57504073_57504073 | 0.50 | 2.9e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr24_-_38113208 Show fit | 1.68 |
ENSDART00000079003
|
c-reactive protein, pentraxin-related |
|
chr18_+_642889 Show fit | 1.66 |
ENSDART00000189007
|
|
|
chr14_+_35748385 Show fit | 1.35 |
ENSDART00000064617
ENSDART00000074671 ENSDART00000172803 |
glutamate receptor, ionotropic, AMPA 2b |
|
chr15_-_34418525 Show fit | 1.33 |
ENSDART00000147582
|
alkylglycerol monooxygenase |
|
chr1_-_21409877 Show fit | 1.29 |
ENSDART00000102782
|
glutamate receptor, ionotropic, AMPA 2a |
|
chr17_-_20897407 Show fit | 1.27 |
ENSDART00000149481
|
ankyrin 3b |
|
chr14_+_35748206 Show fit | 1.24 |
ENSDART00000177391
|
glutamate receptor, ionotropic, AMPA 2b |
|
chr3_-_60142530 Show fit | 1.23 |
ENSDART00000153247
|
si:ch211-120g10.1 |
|
chr4_-_5291256 Show fit | 1.22 |
ENSDART00000150864
|
si:ch211-214j24.9 |
|
chr1_+_19332837 Show fit | 1.21 |
ENSDART00000078594
|
tyrosinase-related protein 1b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.7 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
0.0 | 1.5 | GO:1903670 | regulation of sprouting angiogenesis(GO:1903670) |
0.0 | 1.4 | GO:0005978 | glycogen biosynthetic process(GO:0005978) glucan biosynthetic process(GO:0009250) |
0.3 | 1.3 | GO:0046485 | ether lipid metabolic process(GO:0046485) |
0.1 | 1.3 | GO:0048899 | anterior lateral line development(GO:0048899) |
0.0 | 1.3 | GO:0021854 | hypothalamus development(GO:0021854) |
0.0 | 1.3 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
0.2 | 1.2 | GO:0097066 | response to thyroid hormone(GO:0097066) |
0.4 | 1.1 | GO:0031630 | regulation of synaptic vesicle fusion to presynaptic membrane(GO:0031630) |
0.0 | 1.0 | GO:0015701 | bicarbonate transport(GO:0015701) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.0 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.0 | 1.5 | GO:0030141 | secretory granule(GO:0030141) |
0.0 | 1.3 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.1 | 1.2 | GO:0045009 | melanosome membrane(GO:0033162) chitosome(GO:0045009) |
0.2 | 0.8 | GO:1990513 | CLOCK-BMAL transcription complex(GO:1990513) |
0.1 | 0.6 | GO:0097648 | G-protein coupled receptor dimeric complex(GO:0038037) G-protein coupled receptor heterodimeric complex(GO:0038039) G-protein coupled receptor complex(GO:0097648) |
0.0 | 0.6 | GO:0070775 | H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776) |
0.0 | 0.5 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.1 | 0.4 | GO:0032591 | dendritic spine membrane(GO:0032591) |
0.0 | 0.4 | GO:0005640 | nuclear outer membrane(GO:0005640) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.9 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.3 | 1.4 | GO:0003844 | 1,4-alpha-glucan branching enzyme activity(GO:0003844) |
0.1 | 1.3 | GO:0016714 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen(GO:0016714) |
0.0 | 1.3 | GO:0015485 | cholesterol binding(GO:0015485) |
0.0 | 1.1 | GO:0005518 | collagen binding(GO:0005518) |
0.1 | 1.0 | GO:0008510 | sodium:bicarbonate symporter activity(GO:0008510) |
0.1 | 1.0 | GO:0048495 | Roundabout binding(GO:0048495) |
0.3 | 0.9 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
0.0 | 0.9 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.2 | 0.8 | GO:0070324 | thyroid hormone binding(GO:0070324) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.0 | 1.1 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 1.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.8 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.5 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.0 | 0.4 | PID PI3K PLC TRK PATHWAY | Trk receptor signaling mediated by PI3K and PLC-gamma |
0.0 | 0.3 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.1 | 1.1 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 0.8 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 0.8 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.0 | 0.4 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.0 | 0.4 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.0 | 0.4 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 0.2 | REACTOME REGULATION OF IFNA SIGNALING | Genes involved in Regulation of IFNA signaling |
0.0 | 0.2 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |