PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
osr1 | dr11_v1_chr13_+_32148338_32148338 | -0.31 | 1.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_8040436 Show fit | 3.87 |
ENSDART00000113033
|
si:ch211-240l19.6 |
|
chr11_-_29996344 Show fit | 3.65 |
ENSDART00000003712
ENSDART00000126110 |
angiotensin I converting enzyme 2 |
|
chr20_+_30490682 Show fit | 2.59 |
ENSDART00000184871
|
myelin transcription factor 1-like, a |
|
chr18_+_907266 Show fit | 2.50 |
ENSDART00000171729
|
pyruvate kinase M1/2a |
|
chr9_-_22069364 Show fit | 2.50 |
ENSDART00000101938
|
crystallin, gamma M2b |
|
chr19_-_1023051 Show fit | 2.44 |
ENSDART00000158429
|
transmembrane protein 42b |
|
chr14_+_35901249 Show fit | 2.40 |
ENSDART00000105604
|
zgc:77938 |
|
chr13_-_992458 Show fit | 2.35 |
ENSDART00000114655
|
beaded filament structural protein 1 |
|
chr20_-_29418620 Show fit | 2.18 |
ENSDART00000172634
|
ryanodine receptor 3 |
|
chr24_+_40529346 Show fit | 2.16 |
ENSDART00000168548
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.6 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 3.6 | GO:0060402 | cytosolic calcium ion transport(GO:0060401) calcium ion transport into cytosol(GO:0060402) |
0.2 | 2.7 | GO:0048899 | anterior lateral line development(GO:0048899) |
0.3 | 2.4 | GO:0046292 | formaldehyde metabolic process(GO:0046292) formaldehyde catabolic process(GO:0046294) |
0.0 | 2.4 | GO:0006096 | glycolytic process(GO:0006096) |
0.1 | 2.3 | GO:0048268 | clathrin coat assembly(GO:0048268) |
0.1 | 2.2 | GO:0031114 | regulation of microtubule depolymerization(GO:0031114) |
0.3 | 2.1 | GO:0045745 | positive regulation of G-protein coupled receptor protein signaling pathway(GO:0045745) |
0.1 | 2.0 | GO:0007168 | receptor guanylyl cyclase signaling pathway(GO:0007168) |
0.0 | 2.0 | GO:0035195 | gene silencing by miRNA(GO:0035195) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.3 | 2.2 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
0.0 | 2.2 | GO:0043025 | neuronal cell body(GO:0043025) |
0.3 | 2.1 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
0.1 | 2.0 | GO:0043679 | axon terminus(GO:0043679) |
0.0 | 1.9 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.0 | 1.9 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.1 | 1.7 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.0 | 1.7 | GO:0005884 | actin filament(GO:0005884) |
0.2 | 1.6 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 3.6 | GO:0004180 | carboxypeptidase activity(GO:0004180) |
0.4 | 2.5 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.5 | 2.4 | GO:0004024 | alcohol dehydrogenase activity, zinc-dependent(GO:0004024) S-(hydroxymethyl)glutathione dehydrogenase activity(GO:0051903) |
0.0 | 2.3 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.4 | 2.2 | GO:0048763 | ryanodine-sensitive calcium-release channel activity(GO:0005219) calcium-induced calcium release activity(GO:0048763) |
0.2 | 2.1 | GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555) |
0.7 | 2.0 | GO:0010852 | cyclase inhibitor activity(GO:0010852) guanylate cyclase inhibitor activity(GO:0030251) |
0.2 | 2.0 | GO:0031628 | opioid receptor binding(GO:0031628) |
0.1 | 1.9 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.9 | PID IL27 PATHWAY | IL27-mediated signaling events |
0.0 | 0.8 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.1 | 0.6 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 0.6 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 0.4 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.0 | 0.4 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.0 | 0.2 | PID BCR 5PATHWAY | BCR signaling pathway |
0.0 | 0.1 | ST JAK STAT PATHWAY | Jak-STAT Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.1 | 1.6 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.1 | 1.5 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.1 | 1.3 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 1.2 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.0 | 1.2 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.0 | 1.0 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
0.0 | 1.0 | REACTOME RNA POL I RNA POL III AND MITOCHONDRIAL TRANSCRIPTION | Genes involved in RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription |
0.1 | 0.9 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
0.0 | 0.9 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |