PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
otpa | dr11_v1_chr21_+_7582036_7582059 | -0.32 | 1.8e-01 | Click! |
otpb | dr11_v1_chr5_-_51619262_51619321 | 0.10 | 6.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_54209504 Show fit | 1.74 |
ENSDART00000020033
|
X-ray repair complementing defective repair in Chinese hamster cells 1 |
|
chr12_-_35830625 Show fit | 1.56 |
ENSDART00000180028
|
|
|
chr1_-_31534089 Show fit | 1.50 |
ENSDART00000007770
|
ladybird homeobox 1b |
|
chr17_-_16422654 Show fit | 1.48 |
ENSDART00000150149
|
tyrosyl-DNA phosphodiesterase 1 |
|
chr20_+_98179 Show fit | 1.11 |
ENSDART00000022725
|
si:ch1073-155h21.1 |
|
chr23_+_36460239 Show fit | 1.04 |
ENSDART00000172441
|
LIM domain and actin binding 1a |
|
chr3_-_15999501 Show fit | 0.99 |
ENSDART00000160668
|
NME/NM23 nucleoside diphosphate kinase 3 |
|
chr3_-_19368435 Show fit | 0.95 |
ENSDART00000132987
|
sphingosine-1-phosphate receptor 5a |
|
chr7_+_38811800 Show fit | 0.93 |
ENSDART00000052322
|
zgc:110699 |
|
chr24_+_19415124 Show fit | 0.92 |
ENSDART00000186931
|
sulfatase 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.2 | GO:0000012 | single strand break repair(GO:0000012) |
0.1 | 1.4 | GO:0000915 | assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) actomyosin contractile ring assembly(GO:0000915) actomyosin contractile ring organization(GO:0044837) |
0.1 | 1.0 | GO:0021592 | fourth ventricle development(GO:0021592) |
0.1 | 1.0 | GO:0006228 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.0 | 1.0 | GO:0016925 | protein sumoylation(GO:0016925) |
0.1 | 0.9 | GO:2000290 | smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021910) regulation of myotome development(GO:2000290) |
0.2 | 0.8 | GO:0048618 | post-embryonic foregut morphogenesis(GO:0048618) |
0.2 | 0.8 | GO:0006700 | C21-steroid hormone biosynthetic process(GO:0006700) |
0.2 | 0.7 | GO:0015722 | canalicular bile acid transport(GO:0015722) bile acid secretion(GO:0032782) |
0.1 | 0.7 | GO:0060005 | reflex(GO:0060004) vestibular reflex(GO:0060005) vestibular receptor cell differentiation(GO:0060114) vestibular receptor cell development(GO:0060118) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | GO:0005689 | U12-type spliceosomal complex(GO:0005689) |
0.1 | 0.6 | GO:0016589 | NURF complex(GO:0016589) |
0.0 | 0.6 | GO:0005605 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
0.0 | 0.6 | GO:0030686 | 90S preribosome(GO:0030686) |
0.0 | 0.5 | GO:0005665 | DNA-directed RNA polymerase II, core complex(GO:0005665) |
0.1 | 0.4 | GO:1990072 | TRAPPIII protein complex(GO:1990072) |
0.0 | 0.4 | GO:0071797 | LUBAC complex(GO:0071797) |
0.0 | 0.4 | GO:0008180 | COP9 signalosome(GO:0008180) |
0.1 | 0.3 | GO:1990879 | CST complex(GO:1990879) |
0.0 | 0.3 | GO:0034464 | BBSome(GO:0034464) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.5 | 1.5 | GO:0070259 | tyrosyl-DNA phosphodiesterase activity(GO:0070259) |
0.1 | 1.3 | GO:0004065 | arylsulfatase activity(GO:0004065) |
0.1 | 1.0 | GO:0038036 | sphingosine-1-phosphate receptor activity(GO:0038036) |
0.1 | 1.0 | GO:0061665 | SUMO ligase activity(GO:0061665) |
0.0 | 1.0 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.3 | 0.8 | GO:0016713 | cholesterol monooxygenase (side-chain-cleaving) activity(GO:0008386) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713) |
0.2 | 0.7 | GO:0015432 | canalicular bile acid transmembrane transporter activity(GO:0015126) bile acid-exporting ATPase activity(GO:0015432) |
0.0 | 0.7 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.0 | 0.6 | GO:0005537 | mannose binding(GO:0005537) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.4 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 1.0 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 0.4 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.1 | 1.5 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.0 | 1.3 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 0.8 | REACTOME ENDOGENOUS STEROLS | Genes involved in Endogenous sterols |
0.1 | 0.7 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 0.6 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.0 | 0.5 | REACTOME VIRAL MESSENGER RNA SYNTHESIS | Genes involved in Viral Messenger RNA Synthesis |
0.0 | 0.5 | REACTOME MITOCHONDRIAL TRNA AMINOACYLATION | Genes involved in Mitochondrial tRNA aminoacylation |
0.0 | 0.4 | REACTOME LATENT INFECTION OF HOMO SAPIENS WITH MYCOBACTERIUM TUBERCULOSIS | Genes involved in Latent infection of Homo sapiens with Mycobacterium tuberculosis |
0.0 | 0.4 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |