PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
otx2b | dr11_v1_chr17_-_44249538_44249538 | -0.22 | 3.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_54077740 Show fit | 14.29 |
ENSDART00000027000
|
rhodopsin |
|
chr8_+_6954984 Show fit | 12.50 |
ENSDART00000145610
|
si:ch211-255g12.6 |
|
chr9_+_13714379 Show fit | 9.30 |
ENSDART00000017593
ENSDART00000145503 |
transmembrane protein 237a |
|
chr17_-_51202339 Show fit | 8.90 |
ENSDART00000167117
|
si:ch1073-469d17.2 |
|
chr14_+_32839535 Show fit | 8.49 |
ENSDART00000168975
|
arrestin 3b, retinal (X-arrestin) |
|
chr3_+_34220194 Show fit | 7.59 |
ENSDART00000145859
|
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23b |
|
chr3_+_15296824 Show fit | 7.35 |
ENSDART00000043801
|
calcium binding protein 5b |
|
chr1_-_58009216 Show fit | 7.27 |
ENSDART00000143829
|
nucleoredoxin like 1 |
|
chr10_+_375042 Show fit | 6.74 |
ENSDART00000171854
|
si:ch1073-303d10.1 |
|
chr23_+_39854566 Show fit | 6.45 |
ENSDART00000190423
ENSDART00000164473 ENSDART00000161881 |
si:ch73-217b7.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.8 | 14.3 | GO:0016056 | rhodopsin mediated signaling pathway(GO:0016056) |
0.4 | 10.3 | GO:0007634 | optokinetic behavior(GO:0007634) |
0.1 | 9.6 | GO:0007601 | visual perception(GO:0007601) |
0.0 | 9.4 | GO:0008154 | actin polymerization or depolymerization(GO:0008154) |
0.1 | 9.3 | GO:0060027 | convergent extension involved in gastrulation(GO:0060027) |
0.7 | 8.5 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.2 | 8.2 | GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0007157) |
0.2 | 7.8 | GO:0007602 | phototransduction(GO:0007602) |
0.2 | 7.3 | GO:0045494 | photoreceptor cell maintenance(GO:0045494) |
0.1 | 6.3 | GO:0007098 | centrosome cycle(GO:0007098) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 18.1 | GO:0060170 | ciliary membrane(GO:0060170) |
0.1 | 14.0 | GO:0045177 | apical part of cell(GO:0045177) |
0.4 | 13.0 | GO:0035869 | ciliary transition zone(GO:0035869) |
0.3 | 10.2 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 8.3 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 6.9 | GO:0016342 | catenin complex(GO:0016342) |
1.0 | 6.2 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.1 | 5.9 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 5.7 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.2 | 5.0 | GO:0043195 | terminal bouton(GO:0043195) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.1 | 15.2 | GO:0005502 | 11-cis retinal binding(GO:0005502) |
0.1 | 14.8 | GO:0015293 | symporter activity(GO:0015293) |
0.2 | 8.8 | GO:0004712 | protein serine/threonine/tyrosine kinase activity(GO:0004712) |
0.2 | 8.1 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.1 | 7.6 | GO:0005347 | ATP transmembrane transporter activity(GO:0005347) |
0.0 | 7.4 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.3 | 6.3 | GO:0005080 | protein kinase C binding(GO:0005080) |
0.2 | 6.2 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.1 | 5.9 | GO:1902936 | phosphatidylinositol bisphosphate binding(GO:1902936) |
0.1 | 5.9 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 15.8 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.1 | 4.5 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 3.0 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.1 | 2.9 | PID IL2 1PATHWAY | IL2-mediated signaling events |
0.1 | 2.6 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
0.1 | 2.4 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.2 | 1.8 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.0 | 0.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.6 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.0 | 18.1 | REACTOME OPSINS | Genes involved in Opsins |
0.2 | 6.2 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.3 | 4.9 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.4 | 3.4 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.1 | 3.3 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.0 | 3.1 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 3.0 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.2 | 2.9 | REACTOME GROWTH HORMONE RECEPTOR SIGNALING | Genes involved in Growth hormone receptor signaling |
0.9 | 2.6 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
0.2 | 2.4 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |