PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
otx5 | dr11_v1_chr15_+_47903864_47903864 | -0.27 | 2.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_25737452 Show fit | 1.70 |
ENSDART00000152021
|
si:ch211-214p16.3 |
|
chr4_+_18804317 Show fit | 1.64 |
ENSDART00000101043
|
solute carrier family 26 (anion exchanger), member 3, tandem duplicate 2 |
|
chr18_-_40684756 Show fit | 1.46 |
ENSDART00000113799
ENSDART00000139042 |
si:ch211-132b12.7 |
|
chr13_+_23176330 Show fit | 1.44 |
ENSDART00000168351
|
sorbin and SH3 domain containing 1 |
|
chr19_-_2115040 Show fit | 1.31 |
ENSDART00000020497
|
sorting nexin 13 |
|
chr17_+_50701748 Show fit | 1.10 |
ENSDART00000191938
ENSDART00000183220 ENSDART00000049464 |
fermitin family member 2 |
|
chr15_-_5815006 Show fit | 1.03 |
ENSDART00000102459
|
retinol binding protein 2a, cellular |
|
chr2_-_48171112 Show fit | 1.02 |
ENSDART00000156258
|
phosphofructokinase, platelet b |
|
chr3_-_49138004 Show fit | 0.99 |
ENSDART00000167173
|
GIPC PDZ domain containing family, member 1 |
|
chr23_+_39963599 Show fit | 0.98 |
ENSDART00000166539
|
FYVE and coiled-coil domain containing 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | GO:0015701 | bicarbonate transport(GO:0015701) |
0.4 | 1.5 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
0.4 | 1.2 | GO:0010658 | negative regulation of muscle cell apoptotic process(GO:0010656) muscle cell apoptotic process(GO:0010657) striated muscle cell apoptotic process(GO:0010658) regulation of muscle cell apoptotic process(GO:0010660) regulation of striated muscle cell apoptotic process(GO:0010662) negative regulation of striated muscle cell apoptotic process(GO:0010664) |
0.0 | 1.2 | GO:0031023 | microtubule organizing center organization(GO:0031023) |
0.0 | 1.1 | GO:0055008 | cardiac muscle tissue morphogenesis(GO:0055008) |
0.2 | 1.0 | GO:1901098 | positive regulation of autophagosome maturation(GO:1901098) |
0.1 | 1.0 | GO:0048845 | venous blood vessel morphogenesis(GO:0048845) |
0.1 | 0.9 | GO:0061718 | glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
0.0 | 0.9 | GO:0018149 | peptide cross-linking(GO:0018149) |
0.0 | 0.9 | GO:0050708 | regulation of protein secretion(GO:0050708) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.1 | GO:0031258 | lamellipodium membrane(GO:0031258) |
0.0 | 1.1 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.1 | 1.0 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.0 | 1.0 | GO:0005776 | autophagosome(GO:0005776) |
0.1 | 0.9 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
0.2 | 0.8 | GO:0098842 | postsynaptic early endosome(GO:0098842) |
0.0 | 0.8 | GO:0071010 | U2-type prespliceosome(GO:0071004) prespliceosome(GO:0071010) |
0.0 | 0.7 | GO:0090665 | dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665) |
0.0 | 0.6 | GO:0055038 | recycling endosome membrane(GO:0055038) |
0.1 | 0.4 | GO:0031673 | H zone(GO:0031673) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | GO:0005080 | protein kinase C binding(GO:0005080) |
0.1 | 1.6 | GO:0019531 | oxalate transmembrane transporter activity(GO:0019531) |
0.0 | 1.1 | GO:0005178 | integrin binding(GO:0005178) |
0.0 | 1.0 | GO:0004707 | MAP kinase activity(GO:0004707) |
0.1 | 0.9 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
0.1 | 0.9 | GO:0005222 | intracellular cyclic nucleotide activated cation channel activity(GO:0005221) intracellular cAMP activated cation channel activity(GO:0005222) intracellular cGMP activated cation channel activity(GO:0005223) cyclic nucleotide-gated ion channel activity(GO:0043855) |
0.1 | 0.9 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
0.1 | 0.9 | GO:0045159 | myosin II binding(GO:0045159) |
0.0 | 0.9 | GO:0003810 | protein-glutamine gamma-glutamyltransferase activity(GO:0003810) |
0.1 | 0.8 | GO:0003841 | 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.1 | 1.3 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.1 | 1.0 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.1 | 0.6 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.0 | 0.6 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 0.1 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.1 | 1.1 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.1 | 0.8 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |
0.1 | 0.8 | REACTOME TRAFFICKING OF GLUR2 CONTAINING AMPA RECEPTORS | Genes involved in Trafficking of GluR2-containing AMPA receptors |
0.0 | 0.8 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.0 | 0.7 | REACTOME MUSCLE CONTRACTION | Genes involved in Muscle contraction |
0.0 | 0.5 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.0 | 0.3 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.0 | 0.3 | REACTOME REGULATION OF SIGNALING BY CBL | Genes involved in Regulation of signaling by CBL |
0.0 | 0.2 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |