PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
patz1 | dr11_v1_chr6_+_40951227_40951227 | 0.64 | 3.3e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_48111285 Show fit | 2.91 |
ENSDART00000169420
|
NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 |
|
chr19_-_5254699 Show fit | 2.15 |
ENSDART00000081951
|
syntaxin 1B |
|
chr1_-_14233815 Show fit | 1.93 |
ENSDART00000044896
|
calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 2 |
|
chr7_+_568819 Show fit | 1.58 |
ENSDART00000173716
|
neurexin 2b |
|
chr25_-_13363286 Show fit | 1.50 |
ENSDART00000163735
ENSDART00000169119 |
NDRG family member 4 |
|
chr8_-_410199 Show fit | 1.44 |
ENSDART00000091177
ENSDART00000122979 ENSDART00000151331 ENSDART00000151155 |
tripartite motif containing 36 |
|
chr5_+_36614196 Show fit | 1.33 |
ENSDART00000150574
|
neuro-oncological ventral antigen 1 |
|
chr2_+_59015878 Show fit | 1.33 |
ENSDART00000148816
ENSDART00000122795 |
si:ch1073-391i24.1 |
|
chr2_+_33052360 Show fit | 1.32 |
ENSDART00000134651
|
ring finger protein 220a |
|
chr17_-_46457622 Show fit | 1.32 |
ENSDART00000130215
|
transmembrane protein 179 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.7 | GO:0006228 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.0 | 2.4 | GO:0006813 | potassium ion transport(GO:0006813) |
0.4 | 2.1 | GO:0098881 | exocytic insertion of neurotransmitter receptor to plasma membrane(GO:0098881) exocytic insertion of neurotransmitter receptor to postsynaptic membrane(GO:0098967) |
0.0 | 1.6 | GO:0032012 | ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012) |
0.1 | 1.5 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.1 | 1.4 | GO:0099550 | trans-synaptic signalling, modulating synaptic transmission(GO:0099550) |
0.0 | 1.3 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.1 | 1.2 | GO:0061001 | regulation of dendritic spine morphogenesis(GO:0061001) |
0.1 | 1.1 | GO:0000737 | DNA catabolic process, endonucleolytic(GO:0000737) |
0.0 | 1.1 | GO:0006909 | phagocytosis(GO:0006909) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.1 | GO:0048787 | presynaptic active zone membrane(GO:0048787) |
0.0 | 2.1 | GO:0031941 | filamentous actin(GO:0031941) |
0.1 | 1.6 | GO:0044295 | axonal growth cone(GO:0044295) |
0.1 | 1.6 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.2 | 1.5 | GO:0005890 | sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533) |
0.0 | 1.5 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 1.1 | GO:0044224 | paranode region of axon(GO:0033270) juxtaparanode region of axon(GO:0044224) |
0.1 | 1.0 | GO:0043194 | axon initial segment(GO:0043194) |
0.1 | 0.9 | GO:0031209 | SCAR complex(GO:0031209) |
0.0 | 0.9 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.0 | 2.3 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.0 | 1.9 | GO:0005484 | SNAP receptor activity(GO:0005484) |
0.0 | 1.9 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.1 | 1.6 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.0 | 1.5 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.1 | 1.4 | GO:0051393 | muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393) |
0.0 | 1.4 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.0 | 1.3 | GO:0005251 | delayed rectifier potassium channel activity(GO:0005251) |
0.0 | 1.1 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 0.9 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.1 | 0.7 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.6 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 0.6 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 0.6 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.6 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.1 | 0.4 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 0.4 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 0.3 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.1 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.1 | 1.6 | REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE | Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline |
0.0 | 0.8 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 0.7 | REACTOME DSCAM INTERACTIONS | Genes involved in DSCAM interactions |
0.1 | 0.7 | REACTOME GAP JUNCTION TRAFFICKING | Genes involved in Gap junction trafficking |
0.1 | 0.7 | REACTOME IRAK1 RECRUITS IKK COMPLEX | Genes involved in IRAK1 recruits IKK complex |
0.1 | 0.7 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.0 | 0.7 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.0 | 0.7 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.0 | 0.5 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |