PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pax2a | dr11_v1_chr13_+_29771463_29771463 | 0.67 | 1.5e-03 | Click! |
pax5 | dr11_v1_chr1_+_21725821_21725821 | -0.49 | 3.5e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22318511 Show fit | 2.45 |
ENSDART00000129295
|
crystallin, gamma M2d2 |
|
chr12_+_13256415 Show fit | 2.33 |
ENSDART00000144542
|
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like |
|
chr3_-_61205711 Show fit | 2.29 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr1_+_14283692 Show fit | 2.00 |
ENSDART00000017679
|
protein phosphatase 2, regulatory subunit B, gamma a |
|
chr11_-_44543082 Show fit | 1.91 |
ENSDART00000099568
|
G protein-coupled receptor 137Bb |
|
chr7_+_29952169 Show fit | 1.83 |
ENSDART00000173540
ENSDART00000173940 ENSDART00000173906 ENSDART00000173772 ENSDART00000173506 ENSDART00000039657 |
alpha-tropomyosin |
|
chr24_-_41312459 Show fit | 1.78 |
ENSDART00000041349
|
crystallin, gamma N2 |
|
chr9_-_22232902 Show fit | 1.71 |
ENSDART00000101845
|
crystallin, gamma M2d5 |
|
chr5_+_36974931 Show fit | 1.66 |
ENSDART00000193063
|
gap junction protein delta 1a |
|
chr2_+_32780138 Show fit | 1.51 |
ENSDART00000082250
|
zgc:136930 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.9 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 4.4 | GO:0061515 | myeloid cell development(GO:0061515) |
0.0 | 3.4 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.0 | 3.0 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.3 | 2.9 | GO:0070262 | peptidyl-serine dephosphorylation(GO:0070262) |
0.2 | 2.3 | GO:1904071 | presynaptic active zone assembly(GO:1904071) |
0.0 | 2.3 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.0 | 2.1 | GO:0007416 | synapse assembly(GO:0007416) |
0.2 | 2.0 | GO:0061615 | glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
0.6 | 1.9 | GO:0045671 | negative regulation of osteoclast differentiation(GO:0045671) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.8 | GO:0005884 | actin filament(GO:0005884) |
0.0 | 4.2 | GO:0031012 | extracellular matrix(GO:0031012) |
0.0 | 3.6 | GO:0043197 | dendritic spine(GO:0043197) neuron spine(GO:0044309) |
0.0 | 3.0 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 2.8 | GO:0030424 | axon(GO:0030424) |
0.1 | 2.4 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.2 | 2.3 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.1 | 2.2 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.2 | 2.0 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
0.1 | 1.7 | GO:0005922 | connexon complex(GO:0005922) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 4.1 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.2 | 3.6 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
0.1 | 2.3 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.2 | 2.0 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
0.2 | 1.7 | GO:0016933 | extracellular-glycine-gated ion channel activity(GO:0016933) extracellular-glycine-gated chloride channel activity(GO:0016934) |
0.1 | 1.7 | GO:0005243 | gap junction channel activity(GO:0005243) |
0.0 | 1.7 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.0 | 1.7 | GO:0019888 | protein phosphatase regulator activity(GO:0019888) |
0.0 | 1.5 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 1.2 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.0 | 0.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.6 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.6 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.0 | 0.5 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.4 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
0.0 | 0.4 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.4 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.4 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.1 | 1.9 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 1.5 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.1 | 1.1 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |
0.1 | 1.1 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.1 | 1.0 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.1 | 1.0 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.0 | 1.0 | REACTOME KERATAN SULFATE BIOSYNTHESIS | Genes involved in Keratan sulfate biosynthesis |
0.0 | 0.9 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.0 | 0.9 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |